Hi Daiana

You should be able to use mri_vol2vol on the aparc+aseg.mgz and the
talairach.xfm in the subject's mri/transforms dir.

cheers
Bruce

On Thu, 9 Nov 2017, Daya P wrote:

> Hi All,
> I processed a bunch of subjects using recon-all, but now I would like to get labels from
> aparc.a2009s.annot from each subject in MNI space in nii from, the problem is that the annotation
> file (lh and rh) is in subject native space. I have a grey matter mask in MNI from each subject and
> my goal is to have each label from aparc.a2009s.annot to fit that mask.
> How can I do this?
>
> Thank you,
> Daiana
>
>

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