Hi Folks,<div>Based on the tutorials, we normally run full recon-all pipeline; then add control points if required and then  </div><div>run -autorecon2-cp and -autorecon3 again. </div><div><br></div><div>Recently, I was looking at the process flow table: <a href="http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable">http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable</a> </div>

<div>and I have two questions: </div><div><br></div><div>1. From this table it seems like ?h.white is created in autorecon2 and ?h.pial is created in autorecon3. </div><div>However, when i run recon-all -s subj -autorecon1 -autorecon2 i see that ?h.pial is also already created.</div>

<div>Does this mean I am interpreting the process flow table incorrectly or is there an error in the table ? </div><div><br></div><div>2. Also if ?h.pial and ?h.white are already created at the end of autorecon2; then  can we add control </div>

<div>points at immediately after autorecon2 ? This way we would need to run autorecon3 only once and save resources.  </div><div><br></div><div>Or am I missing something and is it that one must run -autorecon2 and -autorecon3 and then add control points </div>

<div>and then run -autorecon2-cp and -autorecon3 again. </div><div><br></div><div>Thanks</div><div>Mehul</div><div><br></div><div><br></div><div><br></div>