2010/4/26 Bruce Fischl <fischl@nmr.mgh.harvard.edu>

and the recon-all.log? Also, can you post these to the list so others can help?

On Mon, 26 Apr 2010, De La Llave Teddy wrote:

Hi Bruce,

here is the output of bugr:

Cut-and-paste the following info into your FreeSurfer problem report:
--------------------------------------------------------------

FREESURFER_HOME: /usr/local/freesurfer

Build stamp: freesurfer-Linux-centos4-stable-pub-v4.5.0

Debian version: 5.0

Kernel info: Linux 2.6.28-18-genric i686

--------------------------------------------------------------
Additional information

1) subject name:
test

2) the entire command-line executed:
recon-all -s test -i /usr/local/freesurfer/subjects/ELMA0016.img
-autorecon-all

3) the error message generated:

Segmentation fault
ERROR: mri_ca_register with non-zero status 139
but continuing despite the error
#-----------------------------------------
#@# CA Reg Inv Mon Apr 26 06:17:14 CEST 2010
/usr/local/freesurfer/subjects/test/mri

mri_ca_register -invert-and-save transforms/talairach.m3z

Loading, Inverting, Saving, Exiting ...
Reading transforms/talairach.m3z
ERROR: cannot find or read transforms/talairach.m3z
ERROR: mri_ca_register with non-zero status 0
Linux freesurfer-virtual 2.6.28-18-generic #60-Ubuntu SMP Fri Mar 12
04:40:52 UTC 2010 i686 GNU/Linux

recon-all exited with ERRORS at Mon Apr 26 06:17:15 CEST 2010

Please find the recon-all.log included in this mail.

cheers,
Teddy

2010/4/26 Bruce Fischl <fischl@nmr.mgh.harvard.edu>

Hi Teddy,

we need more info than this. Can you send us the recon-all.log and the
output of bugr.

cheers
Bruce

On Mon, 26 Apr 2010, De La Llave Teddy wrote:

Hi all,

I am running recon-all as follows:

recon-all -subjid subjectTest -all

and get this error:

Segmentation fault
ERROR: mri_ca_register with non-zero status 139

I can't continue the rest of the process because the file
talairach.m3z not exist.

I saw that others have the same problem but there are no solutions?

freesurfer runs on the virtualbox available in the website. It run
with 1,4Go of RAM.

Thanks for your help,

Teddy

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