I'm attempting to evaluate a segmentation result from CAT12, (sorry) with the Freeview program. For version 1.0 superimposing a gifti surface on top of a nifti volume works beautifully (see results here:
https://www.dropbox.com/s/lwhonnzy7n2t87x/Freeview1.0.pdf?dl=0 ), but with the new version 2.0 the orientation is messed up (see result here:
https://www.dropbox.com/s/ma6p4batv2cc6w4/Freeview2.0.pdf?dl=0 ), for the exact same files. Has anybody else experienced this problem, and could it potentially be caused by recent changes in the minc tools which nifti converter I know have been changed between the two Freeview versions.
The issue seems to be platform independent and exist for both MacOS 10.12.15 and linux (Ubuntu 16.04.1 LTS)