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Hi Naomi,

does the symbolic link

/panfs/pan.fsl.byu.edu/scr/usr/74/intj5/analyses/ACAP-BRAVOS/freesurfer/fsaverage

exist in your filesystem?

Antonin Skoch

Hello FreeSurfer Developers,

I'm attempting to run FreeSurfer but I get the following error when I run the recon-all command:

> ERROR reading /panfs/pan.fsl.byu.edu/scr/usr/74/intj5/analyses/ACAP-BRAVOS/freesurfer/fsaverage/label/lh.BA1_exvivo.label <http://pan.fsl.byu.edu/scr/usr/74/intj5/analyses/ACAP-BRAVOS/freesurfer/fsaverage/label/lh.BA1_exvivo.label>;

I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.

1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
2) Platform: Red Hat Enterprise Linux Server release 6.6 (Santiago)
3) uname -a: Linux m8-8-5 2.6.32-696.18.7.el6.x86_64 #1 SMP Thu Dec 28 20:15:47 EST 2017 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log: see attached

Thanks,

Naomi