I'm having trouble making an average subject. Initially, I had the same error that was discussed here: https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg57012.html; so I installed the patch of FS 6.0.0. After that, this is the ERROR I'm having:

#@# AParc-to-ASeg aparc Fri Feb 28 22:55:29 CST 2020

/Volumes/HD/FREESURFER/Directory/avgsubject

\n mri_aparc2aseg --s avgsubject --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /Applications/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --no-relabel \n

ERROR: Option --no-relabel unknown

relabeling unlikely voxels interior to white matter surface:

norm: mri/norm.mgz

XFORM: mri/transforms/talairach.m3z

GCA: /Applications/freesurfer/average/RB_all_2016-05-10.vc700.gca

label intensities: mri/aseg.auto_noCCseg.label_intensities.txt

Darwin MacBook-Pro-de-Ivan.local 18.7.0 Darwin Kernel Version 18.7.0: Tue Aug 20 16:57:14 PDT 2019; root:xnu-4903.271.2~2/RELEASE_X86_64 x86_64

 

recon-all -s avgsubject exited with ERRORS at Fri Feb 28 22:55:30 CST 2020

 

For more details, see the log file /Volumes/HD/FREESURFER/Directory/avgsubject/scripts/recon-all.log

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

 

I did tried to update the mri_aparc2aseg that is mentioned in the mail thread; however, I cannot download it.

 

FreeSurfer Version: 

Platform: macOS Mojave 10.14.6

Darwin MacBook-Pro-de-Ivan.local 18.7.0 Darwin Kernel Version 18.7.0: Tue Aug 20 16:57:14 PDT 2019; root:xnu-4903.271.2~2/RELEASE_X86_64 x86_64

 

 

Thank you!

 

Ivan Murrieta