Do you have read permission to that file?

On 6/6/17 3:45 AM, 곽유나 wrote:

Hello FS experts,

 I ran recon-all, and got an error saying that it can't read certain txt files from the freesurfer folder. I'm not sure if this is the main reason for exiting with ERRORS, but when I looked into the folder I found that FreeSurferColorLUT.txt , ASegStatsLUT.txt, and others were all stored in .md files. So I changed all of them into .txt, ran recon-all -make (to start from where it left off?), and now it seems to be working.  

 Below is the output in the terminal when the error occurred (for the ASegStatsLUT.txt case)

 

CTABreadASCII(/Applications/freesurfer/ASegStatsLUT.txt): could not open file

Computing euler number

orig.nofix lheno =  -28, rheno = -16

orig.nofix lhholes =   15, rhholes = 9

Loading mri/aseg.mgz

No such file or directory

ERROR: reading /Applications/freesurfer/ASegStatsLUT.txt

Darwin S-Yui-MacBook.local 16.3.0 Darwin Kernel Version 16.3.0: Thu Nov 17 20:23:58 PST 2016; root:xnu-3789.31.2~1/RELEASE_X86_64 x86_64

 

recon-all -s yuna exited with ERRORS at Mon Jun  5 22:20:13 KST 2017

 

 I want to ask if I'm doing this correctly, if it's okay to change the format to .txt and run recon-all -make. 

 Best, Yuna.

p.s. I posted a question on the list one or two days ago and for some reason I wasn't able to reply through the archive with the e-mail address I was using, so I wasn't able to thank you guys for your help. 

Now I'm posting with a new e-mail address, and I wanted to thank you for your replies!

 

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