Bruce
On Wed, 19 Jun 2013, Brigitte Dahmen wrote:
Dear Bruce,
thank you very much!
Please excuse a (potentially naive) follow-up question (as we didn't use
external markers): So if in FSL some raw T1 data are found to be "turned
around", is it something that Freesurfer "takes care of" at a certain point
in the analysis or would you suggest to swap/correct the data after checking
w/ FSL and then analyze them with Freesurfer?
Thanks again and kind regards!
Brigitte
2013/6/19 Bruce Fischl <fischl@nmr.mgh.harvard.edu>
Hi Brigette,
not sure how you could do this except visually. Bring the images
up and verify that the directions that we specify are correct
(although of course this isn't possible for L/R unless you have
some type of external fiducial marker like a vitamin E tablet)
cheers
Bruce
On Wed, 19 Jun 2013, Brigitte Dahmen wrote:
Dear Freesurfer experts,
is there a command in Freesurfer to check for
correct orientation (LAS vs.
PSR) of T1 images (similar to "fslhd" in FSL)?
Thank you very much!
Brigitte
The information in this e-mail is intended only for the person to whom
it is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you
in error
but does not contain patient information, please contact the sender
and properly
dispose of the e-mail.