Dear Kev,
for the subfields, people have been acquiring T2 scans with high in-plane (coronal) resolution like the ones in this paper:
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1820772/
The subfield atlas in FreeSurfer cannot handle such scans, but we will (hopefully soon) release a version that can.
Kind regards,
/Eugenio

Juan Eugenio Iglesias
Postdoctoral researcher BCBL
www.jeiglesias.com
www.bcbl.eu

Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer


----- Original Message -----
From: "Kev" <schummanr@gmail.com>
To: "Freesurfer support list" <Freesurfer@nmr.mgh.harvard.edu>
Sent: Wednesday, June 11, 2014 8:32:33 PM
Subject: [Freesurfer] ?Sequence for Hippo_subfields

Dear FS experts,

I'm in the designing stage of a neuroimaging project on a 3T scanner, and I'm interested in looking at structural information on hippocampus (including subfields).

In addition to the MPRAGE or IR-SPGR, is it worth running a specific acquisition sequence geared to get the most out of all the hippocampus structural measures?

Thanks and regards,

Kev
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