Dear Freesurfer Users,
I have a large number of T1 MPRAGE scans collected on a 3T Siemens Trio scanner that I would like to run through recon-all to get cortical thickness values. However, some of the MPRAGE scans are contaminated by subject motion, but the extent of this varies from scan to scan. Is there a quick automated way to assess whether each MPRAGE is high-quality enough to bother with running through recon-all?
Thanks!
Ezra
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Ezra Wegbreit, PhD
NIMH T32 Post-doctoral Research Fellow in Child Mental Health
Pedi-MIND Program at Bradley Hospital Department of Psychiatry and Human Behavior