Last login: Thu Mar 11 15:05:42 on ttys000 -------- freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c -------- gpvpn-general-172-18-5-165:~ jordanmullins$ cd $SUBJECTS_DIR gpvpn-general-172-18-5-165:input jordanmullins$ make_average_subject --subjects subj401_t1 subj402_t1 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input /Applications/freesurfer/bin/make_average_subject --subjects subj401_t1 subj402_t1 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ Tue Mar 16 09:53:14 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input output ddir is /Volumes/UCR-KINDLab/Jordan/Analyses/input uid=501(jordanmullins) gid=20(staff) groups=20(staff),12(everyone),61(localaccounts),79(_appserverusr),80(admin),81(_appserveradm),98(_lpadmin),33(_appstore),100(_lpoperator),204(_developer),250(_analyticsusers),395(com.apple.access_ftp),398(com.apple.access_screensharing),399(com.apple.access_ssh),400(com.apple.access_remote_ae),701(com.apple.sharepoint.group.1) make_average_surface --subjects subj401_t1 subj402_t1 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input /Applications/freesurfer/bin/make_average_surface --subjects subj401_t1 subj402_t1 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ Tue Mar 16 09:53:36 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average output ddir is /Volumes/UCR-KINDLab/Jordan/Analyses/input uid=501(jordanmullins) gid=20(staff) groups=20(staff),12(everyone),61(localaccounts),79(_appserverusr),80(admin),81(_appserveradm),98(_lpadmin),33(_appstore),100(_lpoperator),204(_developer),250(_analyticsusers),395(com.apple.access_ftp),398(com.apple.access_screensharing),399(com.apple.access_ssh),400(com.apple.access_remote_ae),701(com.apple.sharepoint.group.1) ==================== make_average_surface ==================== Tue Mar 16 09:53:50 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/make_average_surface --subjects subj401_t1 subj402_t1 input subjects: subj401_t1 subj402_t1 output subject: average mri_add_xform_to_header -c auto /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/mni305.cor.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/mni305.cor.mgz INFO: extension is mgz #@# Making lh registration template --------- /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mris_make_template -norot -annot aparc lh sphere.reg subj401_t1 subj402_t1 lh.reg.template.tif not aligning hemispheres before averaging. zeroing medial wall in aparc creating new parameterization... processing subject subj401_t1 (1 of 2) reading spherical surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) ripping medial wall... computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.inflated.H... curvature mean = -0.031, std = 0.955 computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sulc... computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.smoothwm... processing subject subj402_t1 (2 of 2) reading spherical surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg... curvature mean = 0.016, std = 5.621 curvature mean = -0.032, std = 0.310 reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) ripping medial wall... computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.inflated.H... curvature mean = -0.035, std = 0.958 computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sulc... computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.smoothwm... writing updated template with 2 subjects to lh.reg.template.tif... curvature mean = 0.010, std = 5.596 curvature mean = -0.028, std = 0.300 #@# Making rh registration template --------- /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mris_make_template -norot -annot aparc rh sphere.reg subj401_t1 subj402_t1 rh.reg.template.tif not aligning hemispheres before averaging. zeroing medial wall in aparc creating new parameterization... processing subject subj401_t1 (1 of 2) reading spherical surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) ripping medial wall... computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.inflated.H... curvature mean = -0.039, std = 0.948 computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sulc... computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.smoothwm... processing subject subj402_t1 (2 of 2) reading spherical surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg... curvature mean = -0.003, std = 5.591 curvature mean = -0.033, std = 0.319 reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) ripping medial wall... computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.inflated.H... curvature mean = -0.037, std = 0.938 computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sulc... computing parameterization for surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.smoothwm... writing updated template with 2 subjects to rh.reg.template.tif... curvature mean = -0.023, std = 5.598 curvature mean = -0.028, std = 0.296 #@# Making average lh.white surface --------------------- Tue Mar 16 10:10:26 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mris_make_average_surface -i 7 -o white -sdir-out /Volumes/UCR-KINDLab/Jordan/Analyses/input lh white sphere.reg average subj401_t1 subj402_t1 reading vertex positions from white... --------------------------------------------------- hemi = lh avg_surf_name = white canon_surf_name = sphere.reg out_sname = average xform = talairach.xfm --------------------------------------------------- --------------------------------------------------- #@# processing subject 1/2 subj401_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/T1.mgz Surface area: 904.5 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 2/2 subj402_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/T1.mgz Surface area: 863.5 cm^2 Applying linear transform Finished loading all data Avg surf area = 883.971 cm Reading icosahedron from /Applications/freesurfer/lib/bem/ic7.tri... setting group surface area to be 884.0 cm^2 (scale=1.05) Adding volume geometry from /Applications/freesurfer/average/mni305.cor.mgz writing average white surface to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.white writing group avg surface area 884 cm^2 into surface file mris_make_average_surface done #@# Making average lh.pial surface --------------------- Tue Mar 16 10:23:51 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mris_make_average_surface -i 7 -o pial -sdir-out /Volumes/UCR-KINDLab/Jordan/Analyses/input lh pial sphere.reg average subj401_t1 subj402_t1 reading vertex positions from pial... --------------------------------------------------- hemi = lh avg_surf_name = pial canon_surf_name = sphere.reg out_sname = average xform = talairach.xfm --------------------------------------------------- --------------------------------------------------- #@# processing subject 1/2 subj401_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/T1.mgz Surface area: 1135.6 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 2/2 subj402_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/T1.mgz Surface area: 1067.7 cm^2 Applying linear transform Finished loading all data Avg surf area = 1101.62 cm Reading icosahedron from /Applications/freesurfer/lib/bem/ic7.tri... setting group surface area to be 1101.6 cm^2 (scale=1.06) Adding volume geometry from /Applications/freesurfer/average/mni305.cor.mgz writing average pial surface to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.pial writing group avg surface area 1102 cm^2 into surface file mris_make_average_surface done #@# Making average lh.orig surface --------------------- Tue Mar 16 10:46:25 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mris_make_average_surface -i 7 -o orig -sdir-out /Volumes/UCR-KINDLab/Jordan/Analyses/input lh orig sphere.reg average subj401_t1 subj402_t1 reading vertex positions from orig... --------------------------------------------------- hemi = lh avg_surf_name = orig canon_surf_name = sphere.reg out_sname = average xform = talairach.xfm --------------------------------------------------- --------------------------------------------------- #@# processing subject 1/2 subj401_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/T1.mgz Surface area: 867.2 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 2/2 subj402_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/T1.mgz Surface area: 825.6 cm^2 Applying linear transform Finished loading all data Avg surf area = 846.415 cm Reading icosahedron from /Applications/freesurfer/lib/bem/ic7.tri... setting group surface area to be 846.4 cm^2 (scale=1.05) Adding volume geometry from /Applications/freesurfer/average/mni305.cor.mgz writing average orig surface to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.orig writing group avg surface area 846 cm^2 into surface file mris_make_average_surface done --------------------------------------------------- #@# Smoothing, inflating, etc lh ---------------- /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf mris_smooth -nw -n 5 ./lh.white ./lh.smoothwm smoothing for 5 iterations smoothing surface tessellation for 5 iterations... smoothing complete - recomputing first and second fundamental forms... writing group avg surface area 884 cm^2 into surface file mris_inflate -dist .01 -f .001 -no-save-sulc -n 15 ./lh.smoothwm ./lh.inflated l_dist = 0.010 desired rms height = 0.001000000 niterations = 15 Not saving sulc Reading ./lh.smoothwm avg radius = 46.7 mm, total surface area = 72352 mm^2 writing inflated surface to ./lh.inflated inflation took 1.0 minutes step 090: RMS=0.012 (target=0.001) inflation complete. writing group avg surface area 884 cm^2 into surface file Not saving sulc mris_inflate utimesec 39.761613 mris_inflate stimesec 0.077068 mris_inflate ru_maxrss 198275072 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 48305 mris_inflate ru_majflt 377 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 0 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 67 mris_inflate ru_nivcsw 590 annot2std --o label/lh.aparc.annot --lh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --t average --a aparc --srcsurfreg sphere.reg --trgsurfreg sphere.reg Tue Mar 16 11:06:30 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/annot2std --o label/lh.aparc.annot --lh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --t average --a aparc --srcsurfreg sphere.reg --trgsurfreg sphere.reg freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 #@# 1/2 subj401_t1 Tue Mar 16 11:06:47 PDT 2021 mri_annotation2label --subject subj401_t1 --hemi lh --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.ctab --annotation aparc --segbase 0 subject = subj401_t1 annotation = aparc hemi = lh segfile = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.mgh surface = white Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.white Loading annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 0 Converting to a segmentation mri_surf2surf --mapmethod nnf --hemi lh --srcsubject subj401_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.std.mgh Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --mapmethod nnf --hemi lh --srcsubject subj401_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.std.mgh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.std.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Loading source data Converting source to float Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 22633 nTrg121 = 163842, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 75212, nSrcLost = 22633, nSrcMulti = 61031, MnSrcMultiHits = 1.45221 Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.std.mgh #@# 2/2 subj402_t1 Tue Mar 16 11:10:21 PDT 2021 mri_annotation2label --subject subj402_t1 --hemi lh --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.ctab --annotation aparc --segbase 0 subject = subj402_t1 annotation = aparc hemi = lh segfile = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.mgh surface = white Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.white Loading annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 0 Converting to a segmentation mri_surf2surf --mapmethod nnf --hemi lh --srcsubject subj402_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.std.mgh Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --mapmethod nnf --hemi lh --srcsubject subj402_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.std.mgh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.std.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Loading source data Converting source to float Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 18645 nTrg121 = 163842, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 71018, nSrcLost = 18645, nSrcMulti = 58917, MnSrcMultiHits = 1.5755 Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.std.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.std.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.2.subj402_t1.std.mgh --vote --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.vote.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Voting MRIvote: sorting MRIvote: done sorting Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.vote.mgh mri_convert --frame 1 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.vote.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.annot.p.mgh mri_convert.bin --frame 1 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.vote.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.annot.p.mgh $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.vote.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 1 writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.annot.p.mgh... mris_seg2annot --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.vote.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.ctab --s average --hemi lh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.annot $Id: mris_seg2annot.c,v 1.10 2014/11/15 00:07:19 greve Exp $ cwd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average cmdline mris_seg2annot --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.vote.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.ctab --s average --hemi lh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.annot sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins subject average hemi lh surfseg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.vote.mgh ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.ctab annotfile /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.annot Reading surface seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.vote.mgh Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.white Reading ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.ctab Writing annot to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.annot Started at Tue Mar 16 11:06:19 PDT 2021 Ended at Tue Mar 16 11:13:29 PDT 2021 Annot2std-Run-Time-Sec 428 annot2std Done annot2std --o label/lh.aparc.a2009s.annot --lh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --t average --a aparc.a2009s --srcsurfreg sphere.reg --trgsurfreg sphere.reg Tue Mar 16 11:13:47 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/annot2std --o label/lh.aparc.a2009s.annot --lh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --t average --a aparc.a2009s --srcsurfreg sphere.reg --trgsurfreg sphere.reg freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 #@# 1/2 subj401_t1 Tue Mar 16 11:13:59 PDT 2021 mri_annotation2label --subject subj401_t1 --hemi lh --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.ctab --annotation aparc.a2009s --segbase 0 subject = subj401_t1 annotation = aparc.a2009s hemi = lh segfile = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.mgh surface = white Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.white Loading annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/label/lh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Seg base 0 Converting to a segmentation mri_surf2surf --mapmethod nnf --hemi lh --srcsubject subj401_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.std.mgh Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --mapmethod nnf --hemi lh --srcsubject subj401_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.std.mgh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.std.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Loading source data Converting source to float Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 22633 nTrg121 = 163842, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 75212, nSrcLost = 22633, nSrcMulti = 61031, MnSrcMultiHits = 1.45221 Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.std.mgh #@# 2/2 subj402_t1 Tue Mar 16 11:15:00 PDT 2021 mri_annotation2label --subject subj402_t1 --hemi lh --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.ctab --annotation aparc.a2009s --segbase 0 subject = subj402_t1 annotation = aparc.a2009s hemi = lh segfile = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.mgh surface = white Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.white Loading annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/label/lh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Seg base 0 Converting to a segmentation mri_surf2surf --mapmethod nnf --hemi lh --srcsubject subj402_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.std.mgh Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --mapmethod nnf --hemi lh --srcsubject subj402_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.std.mgh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.std.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Loading source data Converting source to float Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 18645 nTrg121 = 163842, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 71018, nSrcLost = 18645, nSrcMulti = 58917, MnSrcMultiHits = 1.5755 Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.std.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.std.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.2.subj402_t1.std.mgh --vote --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.vote.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Voting MRIvote: sorting MRIvote: done sorting Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.vote.mgh mri_convert --frame 1 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.vote.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.a2009s.annot.p.mgh mri_convert.bin --frame 1 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.vote.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.a2009s.annot.p.mgh $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.vote.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 1 writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.a2009s.annot.p.mgh... mris_seg2annot --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.vote.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.ctab --s average --hemi lh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.a2009s.annot $Id: mris_seg2annot.c,v 1.10 2014/11/15 00:07:19 greve Exp $ cwd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average cmdline mris_seg2annot --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.vote.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.ctab --s average --hemi lh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.a2009s.annot sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins subject average hemi lh surfseg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.vote.mgh ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.ctab annotfile /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.a2009s.annot Reading surface seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.vote.mgh Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.white Reading ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.ctab Writing annot to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.a2009s.annot Started at Tue Mar 16 11:13:43 PDT 2021 Ended at Tue Mar 16 11:16:37 PDT 2021 Annot2std-Run-Time-Sec 173 annot2std Done mri_annotation2label --subject average --hemi lh --outdir /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016 --annotation aparc.a2009s subject = average annotation = aparc.a2009s hemi = lh outdir = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016 surface = white Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.white Loading annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76555/seg.1.subj401_t1.ctab) Seg base 11100 max index = 75 0 12400 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.Unknown.label 1 1045 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G&S_frontomargin.label 2 1738 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G&S_occipital_inf.label 3 2521 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G&S_paracentral.label 4 2573 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G&S_subcentral.label 5 645 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G&S_transv_frontopol.label 6 2618 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G&S_cingul-Ant.label 7 2134 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G&S_cingul-Mid-Ant.label 8 2607 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G&S_cingul-Mid-Post.label 9 1102 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_cingul-Post-dorsal.label 10 887 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_cingul-Post-ventral.label 11 1749 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_cuneus.label 12 2070 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_front_inf-Opercular.label 13 607 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_front_inf-Orbital.label 14 1413 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_front_inf-Triangul.label 15 4835 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_front_middle.label 16 8281 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_front_sup.label 17 1275 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_Ins_lg&S_cent_ins.label 18 1362 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_insular_short.label 19 2305 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_occipital_middle.label 20 1325 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_occipital_sup.label 21 1984 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_oc-temp_lat-fusifor.label 22 2815 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_oc-temp_med-Lingual.label 23 1727 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_oc-temp_med-Parahip.label 24 2406 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_orbital.label 25 3091 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_pariet_inf-Angular.label 26 4758 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_pariet_inf-Supramar.label 27 4752 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_parietal_sup.label 28 3484 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_postcentral.label 29 4038 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_precentral.label 30 3902 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_precuneus.label 31 1151 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_rectus.label 32 677 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_subcallosal.label 33 851 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_temp_sup-G_T_transv.label 34 2493 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_temp_sup-Lateral.label 35 1250 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_temp_sup-Plan_polar.label 36 1311 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_temp_sup-Plan_tempo.label 37 2481 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_temporal_inf.label 38 2640 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.G_temporal_middle.label 39 361 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.Lat_Fis-ant-Horizont.label 40 372 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.Lat_Fis-ant-Vertical.label 41 1976 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.Lat_Fis-post.label 42 0 empty --- skipping 43 1692 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.Pole_occipital.label 44 1413 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.Pole_temporal.label 45 2813 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_calcarine.label 46 4729 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_central.label 47 1755 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_cingul-Marginalis.label 48 764 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_circular_insula_ant.label 49 1883 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_circular_insula_inf.label 50 2811 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_circular_insula_sup.label 51 1044 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_collat_transv_ant.label 52 204 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_collat_transv_post.label 53 2033 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_front_inf.label 54 1026 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_front_middle.label 55 2756 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_front_sup.label 56 210 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_interm_prim-Jensen.label 57 4013 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_intrapariet&P_trans.label 58 938 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_oc_middle&Lunatus.label 59 1300 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_oc_sup&transversal.label 60 757 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_occipital_ant.label 61 929 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_oc-temp_lat.label 62 2319 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_oc-temp_med&Lingual.label 63 222 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_orbital_lateral.label 64 678 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_orbital_med-olfact.label 65 1264 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_orbital-H_Shaped.label 66 2394 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_parieto_occipital.label 67 2224 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_pericallosal.label 68 4177 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_postcentral.label 69 1964 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_precentral-inf-part.label 70 1680 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_precentral-sup-part.label 71 616 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_suborbital.label 72 1028 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_subparietal.label 73 1006 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_temporal_inf.label 74 6671 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_temporal_sup.label 75 517 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/lh.S_temporal_transverse.label mri_mergelabels -o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.cortex.label -d /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016 Done mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.sulc.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas sulc --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.sulc.log nsubjects = 2 tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.sulc.log Tue Mar 16 11:26:34 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.sulc.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas sulc --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.sulc.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116 Src lh sphere.reg Trg lh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 11:26:58 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sulc --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sulc --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sulc srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sulc Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (136243) Reverse Loop had 22633 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146262, nTrgMulti = 17580, MnTrgMultiHits = 2.28743 nSrc121 = 97845, nSrcLost = 0, nSrcMulti = 38398, MnSrcMultiHits = 2.30819 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 11:28:52 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sulc --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sulc --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sulc srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sulc Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (129935) Reverse Loop had 18645 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 148981, nTrgMulti = 14861, MnTrgMultiHits = 2.25463 nSrc121 = 89663, nSrcLost = 0, nSrcMulti = 40272, MnSrcMultiHits = 2.30493 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.sulc.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.sulc.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77116 Tue Mar 16 11:31:26 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.sulc.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sulc.avg.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sulc.avg.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.sulc.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.sulc.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.sulc.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sulc.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sulc --trg_type curv --hemi lh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sulc.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sulc --trg_type curv --hemi lh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sulc.avg.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sulc trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.curv.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas curv --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.curv.log nsubjects = 2 tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.curv.log Tue Mar 16 11:32:27 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.curv.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas curv --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.curv.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323 Src lh sphere.reg Trg lh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 11:32:57 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.curv --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.curv --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.curv srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.curv Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (136243) Reverse Loop had 22633 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146262, nTrgMulti = 17580, MnTrgMultiHits = 2.28743 nSrc121 = 97845, nSrcLost = 0, nSrcMulti = 38398, MnSrcMultiHits = 2.30819 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 11:33:49 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.curv --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.curv --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.curv srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.curv Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (129935) Reverse Loop had 18645 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 148981, nTrgMulti = 14861, MnTrgMultiHits = 2.25463 nSrc121 = 89663, nSrcLost = 0, nSrcMulti = 40272, MnSrcMultiHits = 2.30493 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.curv.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.curv.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77323 Tue Mar 16 11:35:18 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.curv.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.curv.avg.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.curv.avg.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.curv.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.curv.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.curv.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.curv.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.curv --trg_type curv --hemi lh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.curv.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.curv --trg_type curv --hemi lh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.curv.avg.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.curv trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.thickness.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas thickness --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.thickness.log nsubjects = 2 tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.thickness.log Tue Mar 16 11:36:02 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.thickness.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas thickness --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.thickness.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645 Src lh sphere.reg Trg lh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 11:36:21 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.thickness --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.thickness --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.thickness srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.thickness Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (136243) Reverse Loop had 22633 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146262, nTrgMulti = 17580, MnTrgMultiHits = 2.28743 nSrc121 = 97845, nSrcLost = 0, nSrcMulti = 38398, MnSrcMultiHits = 2.30819 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 11:37:12 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.thickness --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.thickness --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.thickness srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.thickness Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (129935) Reverse Loop had 18645 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 148981, nTrgMulti = 14861, MnTrgMultiHits = 2.25463 nSrc121 = 89663, nSrcLost = 0, nSrcMulti = 40272, MnSrcMultiHits = 2.30493 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.thickness.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.thickness.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77645 Tue Mar 16 11:38:37 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.thickness.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.thickness.avg.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.thickness.avg.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.thickness.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.thickness.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.thickness.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.thickness.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.thickness --trg_type curv --hemi lh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.thickness.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.thickness --trg_type curv --hemi lh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.thickness.avg.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.thickness trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.area.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas area --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.area.log nsubjects = 2 INFO: turning on jacobican correction tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.area.log Tue Mar 16 11:39:22 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.area.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas area --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.area.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839 Src lh sphere.reg Trg lh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 11:39:41 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.area --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.area --jac --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.area srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.area Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (136243) Reverse Loop had 22633 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 146262, nTrgMulti = 17580, MnTrgMultiHits = 2.28743 nSrc121 = 97845, nSrcLost = 0, nSrcMulti = 38398, MnSrcMultiHits = 2.30819 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 11:40:37 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.area --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.area --jac --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.area srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.area Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (129935) Reverse Loop had 18645 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 148981, nTrgMulti = 14861, MnTrgMultiHits = 2.25463 nSrc121 = 89663, nSrcLost = 0, nSrcMulti = 40272, MnSrcMultiHits = 2.30493 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.area.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.area.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.77839 Tue Mar 16 11:41:47 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.area.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.white.avg.area.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.white.avg.area.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.area.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.area.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.area.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.white.avg.area.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.area --trg_type curv --hemi lh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.white.avg.area.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.area --trg_type curv --hemi lh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.white.avg.area.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.area trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.volume.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas volume --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.volume.log nsubjects = 2 INFO: turning on jacobican correction tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.volume.log Tue Mar 16 11:42:28 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.volume.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas volume --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.volume.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027 Src lh sphere.reg Trg lh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 11:43:03 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.volume --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.volume --jac --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.volume srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.volume Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (136243) Reverse Loop had 22633 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 146262, nTrgMulti = 17580, MnTrgMultiHits = 2.28743 nSrc121 = 97845, nSrcLost = 0, nSrcMulti = 38398, MnSrcMultiHits = 2.30819 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 11:44:04 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.volume --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.volume --jac --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.volume srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.volume Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (129935) Reverse Loop had 18645 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 148981, nTrgMulti = 14861, MnTrgMultiHits = 2.25463 nSrc121 = 89663, nSrcLost = 0, nSrcMulti = 40272, MnSrcMultiHits = 2.30493 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.volume.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.volume.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78027 Tue Mar 16 11:45:09 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.volume.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.volume.avg.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.volume.avg.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.volume.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.volume.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.volume.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.volume.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.volume --trg_type curv --hemi lh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.volume.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.volume --trg_type curv --hemi lh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.volume.avg.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.volume trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.inflated.H.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas inflated.H --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.inflated.H.log nsubjects = 2 tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.inflated.H.log Tue Mar 16 11:45:51 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.inflated.H.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi lh --meas inflated.H --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.lh.inflated.H.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205 Src lh sphere.reg Trg lh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 11:46:08 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.inflated.H --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.inflated.H --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.inflated.H srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/lh.inflated.H Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (136243) Reverse Loop had 22633 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146262, nTrgMulti = 17580, MnTrgMultiHits = 2.28743 nSrc121 = 97845, nSrcLost = 0, nSrcMulti = 38398, MnSrcMultiHits = 2.30819 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 11:46:49 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.inflated.H --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi lh --srcsurfreg sphere.reg --trgsubject average --trghemi lh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.inflated.H --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.inflated.H srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/lh.inflated.H Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (129935) Reverse Loop had 18645 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 148981, nTrgMulti = 14861, MnTrgMultiHits = 2.25463 nSrc121 = 89663, nSrcLost = 0, nSrcMulti = 40272, MnSrcMultiHits = 2.30493 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.inflated.H.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.inflated.H.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.78205 Tue Mar 16 11:47:51 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.inflated.H.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.inflated.H.avg.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.inflated.H.avg.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.lh.inflated.H.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.inflated.H.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.lh.inflated.H.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.inflated.H.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.inflated.H --trg_type curv --hemi lh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.inflated.H.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.inflated.H --trg_type curv --hemi lh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.inflated.H.avg.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.inflated.H trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data #@# Making average rh.white surface --------------------- Tue Mar 16 11:48:27 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mris_make_average_surface -i 7 -o white -sdir-out /Volumes/UCR-KINDLab/Jordan/Analyses/input rh white sphere.reg average subj401_t1 subj402_t1 reading vertex positions from white... --------------------------------------------------- hemi = rh avg_surf_name = white canon_surf_name = sphere.reg out_sname = average xform = talairach.xfm --------------------------------------------------- --------------------------------------------------- #@# processing subject 1/2 subj401_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/T1.mgz Surface area: 907.6 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 2/2 subj402_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/T1.mgz Surface area: 868.2 cm^2 Applying linear transform Finished loading all data Avg surf area = 887.912 cm Reading icosahedron from /Applications/freesurfer/lib/bem/ic7.tri... setting group surface area to be 887.9 cm^2 (scale=1.03) Adding volume geometry from /Applications/freesurfer/average/mni305.cor.mgz writing average white surface to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.white writing group avg surface area 888 cm^2 into surface file mris_make_average_surface done #@# Making average rh.pial surface --------------------- Tue Mar 16 11:54:58 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mris_make_average_surface -i 7 -o pial -sdir-out /Volumes/UCR-KINDLab/Jordan/Analyses/input rh pial sphere.reg average subj401_t1 subj402_t1 reading vertex positions from pial... --------------------------------------------------- hemi = rh avg_surf_name = pial canon_surf_name = sphere.reg out_sname = average xform = talairach.xfm --------------------------------------------------- --------------------------------------------------- #@# processing subject 1/2 subj401_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/T1.mgz Surface area: 1139.4 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 2/2 subj402_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/T1.mgz Surface area: 1068.9 cm^2 Applying linear transform Finished loading all data Avg surf area = 1104.12 cm Reading icosahedron from /Applications/freesurfer/lib/bem/ic7.tri... setting group surface area to be 1104.1 cm^2 (scale=1.04) Adding volume geometry from /Applications/freesurfer/average/mni305.cor.mgz writing average pial surface to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.pial writing group avg surface area 1104 cm^2 into surface file mris_make_average_surface done #@# Making average rh.orig surface --------------------- Tue Mar 16 11:56:07 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mris_make_average_surface -i 7 -o orig -sdir-out /Volumes/UCR-KINDLab/Jordan/Analyses/input rh orig sphere.reg average subj401_t1 subj402_t1 reading vertex positions from orig... --------------------------------------------------- hemi = rh avg_surf_name = orig canon_surf_name = sphere.reg out_sname = average xform = talairach.xfm --------------------------------------------------- --------------------------------------------------- #@# processing subject 1/2 subj401_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/T1.mgz Surface area: 867.9 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 2/2 subj402_t1... Reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Read /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/T1.mgz Surface area: 830.1 cm^2 Applying linear transform Finished loading all data Avg surf area = 849.02 cm Reading icosahedron from /Applications/freesurfer/lib/bem/ic7.tri... setting group surface area to be 849.0 cm^2 (scale=1.03) Adding volume geometry from /Applications/freesurfer/average/mni305.cor.mgz writing average orig surface to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.orig writing group avg surface area 849 cm^2 into surface file mris_make_average_surface done --------------------------------------------------- #@# Smoothing, inflating, etc rh ---------------- /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf mris_smooth -nw -n 5 ./rh.white ./rh.smoothwm smoothing for 5 iterations smoothing surface tessellation for 5 iterations... smoothing complete - recomputing first and second fundamental forms... writing group avg surface area 888 cm^2 into surface file mris_inflate -dist .01 -f .001 -no-save-sulc -n 15 ./rh.smoothwm ./rh.inflated l_dist = 0.010 desired rms height = 0.001000000 niterations = 15 Not saving sulc Reading ./rh.smoothwm avg radius = 46.5 mm, total surface area = 75518 mm^2 writing inflated surface to ./rh.inflated inflation took 1.0 minutes step 090: RMS=0.012 (target=0.001) inflation complete. writing group avg surface area 888 cm^2 into surface file Not saving sulc mris_inflate utimesec 44.150216 mris_inflate stimesec 0.476307 mris_inflate ru_maxrss 206270464 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 50246 mris_inflate ru_majflt 388 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 0 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 106 mris_inflate ru_nivcsw 14492 annot2std --o label/rh.aparc.annot --rh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --t average --a aparc --srcsurfreg sphere.reg --trgsurfreg sphere.reg Tue Mar 16 12:02:12 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/annot2std --o label/rh.aparc.annot --rh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --t average --a aparc --srcsurfreg sphere.reg --trgsurfreg sphere.reg freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 #@# 1/2 subj401_t1 Tue Mar 16 12:02:20 PDT 2021 mri_annotation2label --subject subj401_t1 --hemi rh --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.ctab --annotation aparc --segbase 0 subject = subj401_t1 annotation = aparc hemi = rh segfile = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.mgh surface = white Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.white Loading annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 0 Converting to a segmentation mri_surf2surf --mapmethod nnf --hemi rh --srcsubject subj401_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.std.mgh Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --mapmethod nnf --hemi rh --srcsubject subj401_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.std.mgh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.std.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Loading source data Converting source to float Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 22765 nTrg121 = 163842, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 75582, nSrcLost = 22765, nSrcMulti = 61253, MnSrcMultiHits = 1.44091 Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.std.mgh #@# 2/2 subj402_t1 Tue Mar 16 12:03:58 PDT 2021 mri_annotation2label --subject subj402_t1 --hemi rh --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.ctab --annotation aparc --segbase 0 subject = subj402_t1 annotation = aparc hemi = rh segfile = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.mgh surface = white Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.white Loading annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 0 Converting to a segmentation mri_surf2surf --mapmethod nnf --hemi rh --srcsubject subj402_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.std.mgh Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --mapmethod nnf --hemi rh --srcsubject subj402_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.std.mgh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.std.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Loading source data Converting source to float Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 19406 nTrg121 = 163842, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 71082, nSrcLost = 19406, nSrcMulti = 59329, MnSrcMultiHits = 1.56349 Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.std.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.std.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.2.subj402_t1.std.mgh --vote --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.vote.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Voting MRIvote: sorting MRIvote: done sorting Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.vote.mgh mri_convert --frame 1 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.vote.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.annot.p.mgh mri_convert.bin --frame 1 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.vote.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.annot.p.mgh $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.vote.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 1 writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.annot.p.mgh... mris_seg2annot --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.vote.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.ctab --s average --hemi rh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.annot $Id: mris_seg2annot.c,v 1.10 2014/11/15 00:07:19 greve Exp $ cwd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average cmdline mris_seg2annot --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.vote.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.ctab --s average --hemi rh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.annot sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins subject average hemi rh surfseg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.vote.mgh ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.ctab annotfile /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.annot Reading surface seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.vote.mgh Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.white Reading ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.ctab Writing annot to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.annot Started at Tue Mar 16 12:02:10 PDT 2021 Ended at Tue Mar 16 12:05:42 PDT 2021 Annot2std-Run-Time-Sec 212 annot2std Done annot2std --o label/rh.aparc.a2009s.annot --rh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --t average --a aparc.a2009s --srcsurfreg sphere.reg --trgsurfreg sphere.reg Tue Mar 16 12:05:49 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/annot2std --o label/rh.aparc.a2009s.annot --rh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --t average --a aparc.a2009s --srcsurfreg sphere.reg --trgsurfreg sphere.reg freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 #@# 1/2 subj401_t1 Tue Mar 16 12:05:54 PDT 2021 mri_annotation2label --subject subj401_t1 --hemi rh --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.ctab --annotation aparc.a2009s --segbase 0 subject = subj401_t1 annotation = aparc.a2009s hemi = rh segfile = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.mgh surface = white Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.white Loading annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/label/rh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Seg base 0 Converting to a segmentation mri_surf2surf --mapmethod nnf --hemi rh --srcsubject subj401_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.std.mgh Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --mapmethod nnf --hemi rh --srcsubject subj401_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.std.mgh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.std.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Loading source data Converting source to float Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 22765 nTrg121 = 163842, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 75582, nSrcLost = 22765, nSrcMulti = 61253, MnSrcMultiHits = 1.44091 Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.std.mgh #@# 2/2 subj402_t1 Tue Mar 16 12:06:47 PDT 2021 mri_annotation2label --subject subj402_t1 --hemi rh --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.ctab --annotation aparc.a2009s --segbase 0 subject = subj402_t1 annotation = aparc.a2009s hemi = rh segfile = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.mgh surface = white Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.white Loading annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/label/rh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Seg base 0 Converting to a segmentation mri_surf2surf --mapmethod nnf --hemi rh --srcsubject subj402_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.std.mgh Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --mapmethod nnf --hemi rh --srcsubject subj402_t1 --srcsurfreg sphere.reg --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.mgh --trgsubject average --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.std.mgh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.std.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Loading source data Converting source to float Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 19406 nTrg121 = 163842, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 71082, nSrcLost = 19406, nSrcMulti = 59329, MnSrcMultiHits = 1.56349 Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.std.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.std.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.2.subj402_t1.std.mgh --vote --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.vote.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Voting MRIvote: sorting MRIvote: done sorting Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.vote.mgh mri_convert --frame 1 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.vote.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.a2009s.annot.p.mgh mri_convert.bin --frame 1 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.vote.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.a2009s.annot.p.mgh $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.vote.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 1 writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.a2009s.annot.p.mgh... mris_seg2annot --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.vote.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.ctab --s average --hemi rh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.a2009s.annot $Id: mris_seg2annot.c,v 1.10 2014/11/15 00:07:19 greve Exp $ cwd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average cmdline mris_seg2annot --seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.vote.mgh --ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.ctab --s average --hemi rh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.a2009s.annot sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins subject average hemi rh surfseg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.vote.mgh ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.ctab annotfile /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.a2009s.annot Reading surface seg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.vote.mgh Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.white Reading ctab /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.ctab Writing annot to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.a2009s.annot Started at Tue Mar 16 12:05:47 PDT 2021 Ended at Tue Mar 16 12:07:58 PDT 2021 Annot2std-Run-Time-Sec 131 annot2std Done mri_annotation2label --subject average --hemi rh --outdir /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016 --annotation aparc.a2009s subject = average annotation = aparc.a2009s hemi = rh outdir = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016 surface = white Reading surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.white Loading annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78643/seg.1.subj401_t1.ctab) Seg base 12100 max index = 75 0 12088 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.Unknown.label 1 877 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G&S_frontomargin.label 2 1139 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G&S_occipital_inf.label 3 2454 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G&S_paracentral.label 4 2429 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G&S_subcentral.label 5 984 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G&S_transv_frontopol.label 6 3568 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G&S_cingul-Ant.label 7 2336 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G&S_cingul-Mid-Ant.label 8 2427 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G&S_cingul-Mid-Post.label 9 905 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_cingul-Post-dorsal.label 10 631 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_cingul-Post-ventral.label 11 1916 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_cuneus.label 12 1996 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_front_inf-Opercular.label 13 500 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_front_inf-Orbital.label 14 1294 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_front_inf-Triangul.label 15 4438 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_front_middle.label 16 7710 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_front_sup.label 17 1872 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_Ins_lg&S_cent_ins.label 18 1122 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_insular_short.label 19 2217 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_occipital_middle.label 20 1447 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_occipital_sup.label 21 1854 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_oc-temp_lat-fusifor.label 22 2536 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_oc-temp_med-Lingual.label 23 1490 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_oc-temp_med-Parahip.label 24 3007 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_orbital.label 25 3943 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_pariet_inf-Angular.label 26 4234 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_pariet_inf-Supramar.label 27 3839 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_parietal_sup.label 28 3189 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_postcentral.label 29 3895 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_precentral.label 30 3866 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_precuneus.label 31 932 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_rectus.label 32 664 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_subcallosal.label 33 614 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_temp_sup-G_T_transv.label 34 2393 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_temp_sup-Lateral.label 35 1172 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_temp_sup-Plan_polar.label 36 1271 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_temp_sup-Plan_tempo.label 37 2464 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_temporal_inf.label 38 3212 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.G_temporal_middle.label 39 400 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.Lat_Fis-ant-Horizont.label 40 219 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.Lat_Fis-ant-Vertical.label 41 2446 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.Lat_Fis-post.label 42 0 empty --- skipping 43 2841 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.Pole_occipital.label 44 1678 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.Pole_temporal.label 45 2681 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_calcarine.label 46 4639 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_central.label 47 2322 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_cingul-Marginalis.label 48 859 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_circular_insula_ant.label 49 1773 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_circular_insula_inf.label 50 2034 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_circular_insula_sup.label 51 1056 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_collat_transv_ant.label 52 271 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_collat_transv_post.label 53 2059 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_front_inf.label 54 1767 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_front_middle.label 55 2737 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_front_sup.label 56 523 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_interm_prim-Jensen.label 57 4270 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_intrapariet&P_trans.label 58 812 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_oc_middle&Lunatus.label 59 1361 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_oc_sup&transversal.label 60 720 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_occipital_ant.label 61 714 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_oc-temp_lat.label 62 2146 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_oc-temp_med&Lingual.label 63 224 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_orbital_lateral.label 64 849 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_orbital_med-olfact.label 65 1330 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_orbital-H_Shaped.label 66 2364 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_parieto_occipital.label 67 2197 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_pericallosal.label 68 3795 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_postcentral.label 69 1860 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_precentral-inf-part.label 70 1763 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_precentral-sup-part.label 71 154 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_suborbital.label 72 1561 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_subparietal.label 73 877 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_temporal_inf.label 74 7388 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_temporal_sup.label 75 227 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016/rh.S_temporal_transverse.label mri_mergelabels -o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.cortex.label -d /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/make_cortex_label.tmp.76016 Done mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.sulc.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas sulc --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.sulc.log nsubjects = 2 tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.sulc.log Tue Mar 16 12:11:36 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.sulc.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas sulc --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.sulc.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194 Src rh sphere.reg Trg rh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 12:11:54 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sulc --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sulc --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sulc srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sulc Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (136835) Reverse Loop had 22765 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146234, nTrgMulti = 17608, MnTrgMultiHits = 2.29288 nSrc121 = 98347, nSrcLost = 0, nSrcMulti = 38488, MnSrcMultiHits = 2.29318 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 12:13:08 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sulc --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sulc --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sulc srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sulc Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (130411) Reverse Loop had 19406 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 148461, nTrgMulti = 15381, MnTrgMultiHits = 2.26169 nSrc121 = 90488, nSrcLost = 0, nSrcMulti = 39923, MnSrcMultiHits = 2.32347 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.sulc.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.sulc.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79194 Tue Mar 16 12:14:12 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.sulc.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sulc.avg.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sulc.avg.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.sulc.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.sulc.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.sulc.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sulc.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sulc --trg_type curv --hemi rh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sulc.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sulc --trg_type curv --hemi rh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sulc.avg.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sulc trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.curv.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas curv --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.curv.log nsubjects = 2 tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.curv.log Tue Mar 16 12:14:25 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.curv.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas curv --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.curv.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375 Src rh sphere.reg Trg rh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 12:14:31 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.curv --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.curv --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.curv srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.curv Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (136835) Reverse Loop had 22765 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146234, nTrgMulti = 17608, MnTrgMultiHits = 2.29288 nSrc121 = 98347, nSrcLost = 0, nSrcMulti = 38488, MnSrcMultiHits = 2.29318 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 12:15:40 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.curv --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.curv --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.curv srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.curv Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (130411) Reverse Loop had 19406 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 148461, nTrgMulti = 15381, MnTrgMultiHits = 2.26169 nSrc121 = 90488, nSrcLost = 0, nSrcMulti = 39923, MnSrcMultiHits = 2.32347 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.curv.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.curv.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79375 Tue Mar 16 12:16:35 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.curv.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.curv.avg.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.curv.avg.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.curv.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.curv.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.curv.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.curv.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.curv --trg_type curv --hemi rh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.curv.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.curv --trg_type curv --hemi rh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.curv.avg.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.curv trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.thickness.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas thickness --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.thickness.log nsubjects = 2 tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.thickness.log Tue Mar 16 12:16:46 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.thickness.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas thickness --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.thickness.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554 Src rh sphere.reg Trg rh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 12:16:52 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.thickness --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.thickness --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.thickness srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.thickness Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (136835) Reverse Loop had 22765 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146234, nTrgMulti = 17608, MnTrgMultiHits = 2.29288 nSrc121 = 98347, nSrcLost = 0, nSrcMulti = 38488, MnSrcMultiHits = 2.29318 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 12:17:29 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.thickness --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.thickness --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.thickness srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.thickness Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (130411) Reverse Loop had 19406 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 148461, nTrgMulti = 15381, MnTrgMultiHits = 2.26169 nSrc121 = 90488, nSrcLost = 0, nSrcMulti = 39923, MnSrcMultiHits = 2.32347 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.thickness.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.thickness.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79554 Tue Mar 16 12:17:52 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.thickness.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.thickness.avg.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.thickness.avg.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.thickness.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.thickness.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.thickness.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.thickness.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.thickness --trg_type curv --hemi rh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.thickness.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.thickness --trg_type curv --hemi rh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.thickness.avg.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.thickness trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.area.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas area --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.area.log nsubjects = 2 INFO: turning on jacobican correction tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.area.log Tue Mar 16 12:18:05 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.area.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas area --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.area.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736 Src rh sphere.reg Trg rh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 12:18:10 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.area --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.area --jac --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.area srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.area Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (136835) Reverse Loop had 22765 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 146234, nTrgMulti = 17608, MnTrgMultiHits = 2.29288 nSrc121 = 98347, nSrcLost = 0, nSrcMulti = 38488, MnSrcMultiHits = 2.29318 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 12:18:30 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.area --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.area --jac --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.area srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.area Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (130411) Reverse Loop had 19406 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 148461, nTrgMulti = 15381, MnTrgMultiHits = 2.26169 nSrc121 = 90488, nSrcLost = 0, nSrcMulti = 39923, MnSrcMultiHits = 2.32347 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.area.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.area.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79736 Tue Mar 16 12:18:52 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.area.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.white.avg.area.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.white.avg.area.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.area.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.area.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.area.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.white.avg.area.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.area --trg_type curv --hemi rh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.white.avg.area.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.area --trg_type curv --hemi rh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.white.avg.area.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.area trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.volume.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas volume --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.volume.log nsubjects = 2 INFO: turning on jacobican correction tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.volume.log Tue Mar 16 12:19:06 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.volume.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas volume --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.volume.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911 Src rh sphere.reg Trg rh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 12:19:12 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.volume --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.volume --jac --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.volume srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.volume Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (136835) Reverse Loop had 22765 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 146234, nTrgMulti = 17608, MnTrgMultiHits = 2.29288 nSrc121 = 98347, nSrcLost = 0, nSrcMulti = 38488, MnSrcMultiHits = 2.29318 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 12:19:29 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.volume --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.volume --jac --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.volume srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.volume Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (130411) Reverse Loop had 19406 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 148461, nTrgMulti = 15381, MnTrgMultiHits = 2.26169 nSrc121 = 90488, nSrcLost = 0, nSrcMulti = 39923, MnSrcMultiHits = 2.32347 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.volume.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.volume.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.79911 Tue Mar 16 12:19:51 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.volume.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.volume.avg.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.volume.avg.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.volume.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.volume.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.volume.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.volume.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.volume --trg_type curv --hemi rh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.volume.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.volume --trg_type curv --hemi rh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.volume.avg.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.volume trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.inflated.H.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas inflated.H --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.inflated.H.log nsubjects = 2 tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.inflated.H.log Tue Mar 16 12:20:05 PDT 2021 setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average /Applications/freesurfer/bin/mris_preproc --out /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.inflated.H.mgh --f /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/list.subjects.txt --target average --hemi rh --meas inflated.H --srcsurfreg sphere.reg --log /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/mris_preproc.rh.inflated.H.log Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 $Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $ freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c tmpdir is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088 Src rh sphere.reg Trg rh sphere.reg \n\n --------------------------------------------------- #@# 1/2 subj401_t1 Tue Mar 16 12:20:12 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.inflated.H --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj401_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088/subj401_t1.1.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.inflated.H --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj401_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.inflated.H srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088/subj401_t1.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/surf/rh.inflated.H Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (136835) Reverse Loop had 22765 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146234, nTrgMulti = 17608, MnTrgMultiHits = 2.29288 nSrc121 = 98347, nSrcLost = 0, nSrcMulti = 38488, MnSrcMultiHits = 2.29318 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088/subj401_t1.1.mgh \n\n --------------------------------------------------- #@# 2/2 subj402_t1 Tue Mar 16 12:20:30 PDT 2021 -------------- ----------------------- mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.inflated.H --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --srcsubject subj402_t1 --srchemi rh --srcsurfreg sphere.reg --trgsubject average --trghemi rh --trgsurfreg sphere.reg --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088/subj402_t1.2.mgh --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.inflated.H --sfmt curv --noreshape --cortex sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = subj402_t1 srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.inflated.H srctype = curv trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088/subj402_t1.2.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.sphere.reg Loading source data Reading curvature file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/surf/rh.inflated.H Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (130411) Reverse Loop had 19406 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 148461, nTrgMulti = 15381, MnTrgMultiHits = 2.26169 nSrc121 = 90488, nSrcLost = 0, nSrcMulti = 39923, MnSrcMultiHits = 2.32347 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088/subj402_t1.2.mgh \n\n ----------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088/subj401_t1.1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088/subj402_t1.2.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.inflated.H.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.inflated.H.mgh \n\n Cleaning up ----------------------- rm -r /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/tmp.mris_preproc.80088 Tue Mar 16 12:20:52 PDT 2021 mris_preproc done mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.inflated.H.mgh --mean --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.inflated.H.avg.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing mean across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.inflated.H.avg.mgh mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/stack.rh.inflated.H.mgh --std --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.inflated.H.mgh ninputs = 1 Checking inputs nframestot = 2 Allocing output Done allocing nframes = 2 Computing std/var across frames Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/std.rh.inflated.H.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.inflated.H.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.inflated.H --trg_type curv --hemi rh $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input cd /Volumes/UCR-KINDLab/Jordan/Analyses/input/average mri_surf2surf --sval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.inflated.H.avg.mgh --s average --tval /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.inflated.H --trg_type curv --hemi rh sysname Darwin hostname gpvpn-general-172-18-5-165.net.ucr.edu machine x86_64 user jordanmullins srcsubject = average srcval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.inflated.H.avg.mgh srctype = trgsubject = average trgval = /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.inflated.H trgtype = curv srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.sphere.reg Loading source data INFO: trgsubject = srcsubject Saving target data --------------------------------------------------- make_average_surface-Run-Time-Hours 2.46 Tue Mar 16 12:21:04 PDT 2021 make_average_surface done make_average_volume --subjects subj401_t1 subj402_t1 Log file is /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/make_average_volume.log /Applications/freesurfer/bin/make_average_volume --subjects subj401_t1 subj402_t1 Tue Mar 16 12:21:06 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input setenv SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input sdout /Volumes/UCR-KINDLab/Jordan/Analyses/input mri_convert /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/orig.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/orig-subj401_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm -oc 0 0 0 mri_convert.bin /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/orig.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/orig-subj401_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm -oc 0 0 0 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/orig.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: Reading transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm... Reading transform with LTAreadEx() INFO: Applying transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99861 0.01729 -0.03576 -1.52209; -0.00218 1.10387 0.08986 -41.41286; 0.02441 -0.02651 1.09715 -25.79556; 0.00000 0.00000 0.00000 1.00000; INFO: Transform dst volume info is not used (valid flag = 0). INFO: LTA dst geometry information missing! We assume that the dst volume passed is the same as the dst for the transform. INFO: LTA src geometry information missing! We assume that the src volume passed is the same as the src for the transform. --------------------------------- Applying LTAtransformInterp (resample_type 1) writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/orig-subj401_t1.mgh... mri_convert /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/orig.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/orig-subj402_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm -oc 0 0 0 mri_convert.bin /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/orig.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/orig-subj402_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm -oc 0 0 0 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/orig.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: Reading transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm... Reading transform with LTAreadEx() INFO: Applying transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 1.10706 -0.07743 -0.03154 1.82851; 0.07094 1.11468 0.24482 -29.24294; 0.00434 -0.15948 1.14145 -12.71986; 0.00000 0.00000 0.00000 1.00000; INFO: Transform dst volume info is not used (valid flag = 0). INFO: LTA dst geometry information missing! We assume that the dst volume passed is the same as the dst for the transform. INFO: LTA src geometry information missing! We assume that the src volume passed is the same as the src for the transform. --------------------------------- Applying LTAtransformInterp (resample_type 1) writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/orig-subj402_t1.mgh... mri_average /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/orig-subj401_t1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/orig-subj402_t1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/orig.mgz 1 of 2: reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/orig-subj401_t1.mgh... embedding and interpolating volume 2 of 2: reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/orig-subj402_t1.mgh... embedding and interpolating volume writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/orig.mgz... alignment and averaging took 0 minutes and 19 seconds. mri_add_xform_to_header -c auto /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/orig.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/orig.mgz INFO: extension is mgz mri_convert /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/T1.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/T1-subj401_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm -oc 0 0 0 mri_convert.bin /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/T1.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/T1-subj401_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm -oc 0 0 0 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/T1.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: Reading transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm... Reading transform with LTAreadEx() INFO: Applying transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99861 0.01729 -0.03576 -1.52209; -0.00218 1.10387 0.08986 -41.41286; 0.02441 -0.02651 1.09715 -25.79556; 0.00000 0.00000 0.00000 1.00000; INFO: Transform dst volume info is not used (valid flag = 0). INFO: LTA dst geometry information missing! We assume that the dst volume passed is the same as the dst for the transform. INFO: LTA src geometry information missing! We assume that the src volume passed is the same as the src for the transform. --------------------------------- Applying LTAtransformInterp (resample_type 1) writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/T1-subj401_t1.mgh... mri_convert /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/T1.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/T1-subj402_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm -oc 0 0 0 mri_convert.bin /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/T1.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/T1-subj402_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm -oc 0 0 0 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/T1.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: Reading transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm... Reading transform with LTAreadEx() INFO: Applying transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 1.10706 -0.07743 -0.03154 1.82851; 0.07094 1.11468 0.24482 -29.24294; 0.00434 -0.15948 1.14145 -12.71986; 0.00000 0.00000 0.00000 1.00000; INFO: Transform dst volume info is not used (valid flag = 0). INFO: LTA dst geometry information missing! We assume that the dst volume passed is the same as the dst for the transform. INFO: LTA src geometry information missing! We assume that the src volume passed is the same as the src for the transform. --------------------------------- Applying LTAtransformInterp (resample_type 1) writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/T1-subj402_t1.mgh... mri_average /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/T1-subj401_t1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/T1-subj402_t1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/T1.mgz 1 of 2: reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/T1-subj401_t1.mgh... embedding and interpolating volume 2 of 2: reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/T1-subj402_t1.mgh... embedding and interpolating volume writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/T1.mgz... alignment and averaging took 0 minutes and 16 seconds. mri_add_xform_to_header -c auto /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/T1.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/T1.mgz INFO: extension is mgz mri_convert /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/brain.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/brain-subj401_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm -oc 0 0 0 mri_convert.bin /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/brain.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/brain-subj401_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm -oc 0 0 0 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/brain.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: Reading transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm... Reading transform with LTAreadEx() INFO: Applying transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99861 0.01729 -0.03576 -1.52209; -0.00218 1.10387 0.08986 -41.41286; 0.02441 -0.02651 1.09715 -25.79556; 0.00000 0.00000 0.00000 1.00000; INFO: Transform dst volume info is not used (valid flag = 0). INFO: LTA dst geometry information missing! We assume that the dst volume passed is the same as the dst for the transform. INFO: LTA src geometry information missing! We assume that the src volume passed is the same as the src for the transform. --------------------------------- Applying LTAtransformInterp (resample_type 1) writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/brain-subj401_t1.mgh... mri_convert /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/brain.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/brain-subj402_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm -oc 0 0 0 mri_convert.bin /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/brain.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/brain-subj402_t1.mgh --apply_transform /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm -oc 0 0 0 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/brain.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: Reading transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm... Reading transform with LTAreadEx() INFO: Applying transformation from file /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 1.10706 -0.07743 -0.03154 1.82851; 0.07094 1.11468 0.24482 -29.24294; 0.00434 -0.15948 1.14145 -12.71986; 0.00000 0.00000 0.00000 1.00000; INFO: Transform dst volume info is not used (valid flag = 0). INFO: LTA dst geometry information missing! We assume that the dst volume passed is the same as the dst for the transform. INFO: LTA src geometry information missing! We assume that the src volume passed is the same as the src for the transform. --------------------------------- Applying LTAtransformInterp (resample_type 1) writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/brain-subj402_t1.mgh... mri_average /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/brain-subj401_t1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/brain-subj402_t1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/brain.mgz 1 of 2: reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/brain-subj401_t1.mgh... embedding and interpolating volume 2 of 2: reading /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/brain-subj402_t1.mgh... embedding and interpolating volume writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/brain.mgz... alignment and averaging took 0 minutes and 10 seconds. mri_add_xform_to_header -c auto /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/brain.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/brain.mgz INFO: extension is mgz -------------------------------------- 1/2 subj401_t1 aseg Tue Mar 16 12:25:09 PDT 2021 xfm /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm bn = talairach bn = talairach.xfm mri_vol2vol --mov /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/aseg.mgz --targ /Applications/freesurfer/average/mni305.cor.mgz --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/seg-subj401_t1.mgh --interp nearest --xfm /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm Not reading in xfm fileinfo movvol /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/aseg.mgz targvol /Applications/freesurfer/average/mni305.cor.mgz outvol /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/seg-subj401_t1.mgh xfmfile /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj401_t1/mri/transforms/talairach.xfm invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1616434359 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 1.00053 -0.01486 0.03383 0.17018; 0.00378 0.90407 -0.07393 -5.21283; -0.02217 0.02217 0.90892 11.42390; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00053 0.03383 0.01486 -6.47017; -0.02217 0.90892 -0.02217 5.91048; -0.00378 0.07393 0.90407 -1.91253; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done -------------------------------------- 2/2 subj402_t1 aseg Tue Mar 16 12:26:11 PDT 2021 xfm /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm bn = talairach bn = talairach.xfm mri_vol2vol --mov /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/aseg.mgz --targ /Applications/freesurfer/average/mni305.cor.mgz --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/seg-subj402_t1.mgh --interp nearest --xfm /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm Not reading in xfm fileinfo movvol /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/aseg.mgz targvol /Applications/freesurfer/average/mni305.cor.mgz outvol /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/seg-subj402_t1.mgh xfmfile /Volumes/UCR-KINDLab/Jordan/Analyses/input/subj402_t1/mri/transforms/talairach.xfm invert 0 tal 0 talres 2 regheader 1 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1616239916 Computing registration based on scanner-to-scanner Final tkRAS-to-tkRAS Matrix is: 0.89914 0.06405 0.01110 -0.03087; -0.05479 0.86651 -0.18737 10.39667; -0.01107 0.12082 0.84986 23.84166; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 0.89914 0.01110 -0.06405 19.71700; -0.01107 0.84986 -0.12082 12.25838; 0.05479 0.18737 0.86651 -3.51256; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done -------------------------------------- mri_concat /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/seg-subj401_t1.mgh /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/seg-subj402_t1.mgh --o /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/vote.mgz --vote --mask /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/brainmask.mgz --debug Loading mask /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/brainmask.mgz ninputs = 2 Checking inputs Checking 0 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/seg-subj401_t1.mgh Checking 1 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/seg-subj402_t1.mgh nframestot = 2 Allocing output Done allocing Loading 1th input seg-subj401_t1.mgh Loading 2th input seg-subj402_t1.mgh nframes = 2 Voting MRIvote: sorting MRIvote: done sorting Writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/vote.mgz mri_ca_label utimesec 4.165378 mri_ca_label stimesec 0.260944 mri_ca_label ru_maxrss 275181568 mri_ca_label ru_ixrss 0 mri_ca_label ru_idrss 0 mri_ca_label ru_isrss 0 mri_ca_label ru_minflt 114655 mri_ca_label ru_majflt 82 mri_ca_label ru_nswap 0 mri_ca_label ru_inblock 0 mri_ca_label ru_oublock 0 mri_ca_label ru_msgsnd 0 mri_ca_label ru_msgrcv 0 mri_ca_label ru_nsignals 0 mri_ca_label ru_nvcsw 2208 mri_ca_label ru_nivcsw 1074 mri_convert /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/vote.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/aseg.mgz --frame 0 mri_convert.bin /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/vote.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/aseg.mgz --frame 0 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/vote.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 0 writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/aseg.mgz... mri_convert /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/vote.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/p.aseg.mgz --frame 1 mri_convert.bin /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/vote.mgz /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/p.aseg.mgz --frame 1 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/tmp/make_average_vol-tmp-80279/vote.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 1 writing to /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/p.aseg.mgz... /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri /Volumes/UCR-KINDLab/Jordan/Analyses/input /Volumes/UCR-KINDLab/Jordan/Analyses/input Started at Tue Mar 16 12:21:05 PDT 2021 Ended at Tue Mar 16 12:28:01 PDT 2021 make_average_volume-Run-Time-Sec 416 make_average_volume-Run-Time-Hours 0.12 Tue Mar 16 12:28:02 PDT 2021 make_average_volume done recon-all -s average -cortribbon -aparc2aseg Subject Stamp: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Current Stamp: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c INFO: SUBJECTS_DIR is /Volumes/UCR-KINDLab/Jordan/Analyses/input Actual FREESURFER_HOME /Applications/freesurfer Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 #-------------------------------------------- #@# Cortical ribbon mask Tue Mar 16 12:28:30 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri \n mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon average \n SUBJECTS_DIR is /Volumes/UCR-KINDLab/Jordan/Analyses/input loading input data... computing distance to left white surface computing distance to left pial surface computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 22 writing volume /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/ribbon.mgz mris_volmask took 3.59 minutes writing ribbon files #----------------------------------------- #@# AParc-to-ASeg aparc Tue Mar 16 12:32:08 PDT 2021 /Volumes/UCR-KINDLab/Jordan/Analyses/input/average \n mri_aparc2aseg --s average --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /Applications/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt \n relabeling unlikely voxels interior to white matter surface: norm: mri/norm.mgz XFORM: mri/transforms/talairach.m3z GCA: /Applications/freesurfer/average/RB_all_2016-05-10.vc700.gca label intensities: mri/aseg.auto_noCCseg.label_intensities.txt SUBJECTS_DIR /Volumes/UCR-KINDLab/Jordan/Analyses/input subject average outvol /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/aparc+aseg.mgz useribbon 0 baseoffset 0 RipUnknown 0 Reading lh white surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.white Reading lh pial surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/lh.pial Loading lh annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.76425/seg.1.subj401_t1.ctab) Reading rh white surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.white Reading rh pial surface /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/surf/rh.pial Loading rh annotations from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/label/tmpdir.annot2std.78509/seg.1.subj401_t1.ctab) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/mri/aseg.presurf.hypos.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; mghRead(mri/norm.mgz, -1): could not open file ------------------------- Labeling Slice relabeling unlikely voxels in interior of white matter mri/norm.mgz: could not load norm volume from Darwin gpvpn-general-172-18-5-165.net.ucr.edu 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 recon-all -s average exited with ERRORS at Tue Mar 16 12:32:41 PDT 2021 For more details, see the log file /Volumes/UCR-KINDLab/Jordan/Analyses/input/average/scripts/recon-all.log To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting gpvpn-general-172-18-5-165:input jordanmullins$