I think thiis was a bug that was fixed a while ago, but the fix might not be in your version. I've put a linux version here:

ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_annotation2label

can you give it a try?

doug

Lisa Ronan wrote:

Hi All,

I am interested in creating a surface label for the temporal lobe. I have tried running the mri_annotation2label calling the aparc.a2005s annotations, then merging the appropriate labels. The process sees to work fine except no label is made for S_temporal_superior. I understand from the --help that "if there are no points in the annotation file for a particular index, no label file is created", but I'm not quite sure what this means. There are stats generated for this region so I'm not sure what's going wrong.

I would be grateful for any help on this.

Kind regards,

Lisa Ronan
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Douglas N. Greve, Ph.D.
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