If I were to want to re-run a recon-all completely fresh on a subject, what do I need to do aside from creating a new subject directory?<br><br>I had previously thought that by adding the -all flag, all old files would be over written (i.e. overwrite with a new brainmask.mgz). I want everything fresh.<br>

Does the -clean flag do it all?<br>Thanks<br>Josh<br>