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tksurfer has been deprecated and essentially replaced with tksurferfv bash shell script which runs freeview.   But whether or not you run the front-end tksurferfv bash script or the freeview command directly, I’m not aware of an option whereby you can tell freeview to run tcl/tk scripts.  My understanding is running tck/tk scripts as the -tcl switch allowed in tksurfer - is not supported in freeview.

- R.

- - - - - 

$ tksurferfv --help

This is a script that runs freeview with arguments like tksurfer.
Not all tksurfer functionality is replicated.

tksurferfv subject hemi surface ...

-tksurfer : use tksurfer instead of freeview
Can have multiple annotations

-all : load white, pial, inflated
-vgl : runs freeview with /usr/pubsw/bin/vglrun
-no-vgl : does not run freeview with /usr/pubsw/bin/vglrun
-no-outline : do not show annots as outline
-neuro : use neurological orientation instead of radiological
-rotate-around-cursor (-rca) : in 3d view, rotate around cursor (use -no- to turn off)
-linear, -linearopaque, -piecewise, -min_to_max (default) : overlay heat scale

tksurferfv dev


On Jan 6, 2024, at 20:59, JAEHYUN KIM <jachos930@gmail.com> wrote:

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Hello,

I attempted to switch tksurfer to freeview in the script, but it seems like I need to change arguments "tcl" to something that can be applied to freeview.

Option 'tcl' not recognized.


What argument could possibly be used to replace tcl in the script such as tmp.tcl and lh pial -tcl??


Best,
Ed
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