Hi Joe
there are slight differences, and for sure we reserve the right to use
the knowledge that it is a FLAIR scan in the algorithms, so you should
probably rerun
cheers
Bruce
On Thu, 2 Feb 2017, Joe Necus (PGR) wrote:
>
> Hello,
>
>
> I am running recon-all on the latest version of freesurfer (Version 6) and would like to know whether
> there is any difference between using the -T2 -T2Pial and -Flair flags.
>
>
> I am currently running recon-all with a T1 and FLAIR image, but have used the -T2 -T2pial flags and
> would like to know whether I need to go back and instead re-run with the -FLAIR flag instead.
>
>
> Thanks a lot,
>
> Joe
>
>
>
>
>
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