On Wed, Mar 9, 2011 at 1:07 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

It will eliminate them from the annotation which should mean that those areas should be transparent.
doug

Allie Rosen wrote:

Hi Doug,

Thanks for the response. Do those commands make the annotations/labels transparent?

Allie

On Tue, Mar 8, 2011 at 10:58 PM, Douglas Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:

I've never used that, but you can use mris_annotation2label to
break the annotation in to individual labels,then use
mris_label2annot to put the ones you want back together.

doug

On 3/8/11 10:13 PM, Allie Rosen wrote:

Hi Everyone,

I'm wondering if it is possible to use the "cut" function in
TkSurfer to delete specific atlas annotations. For example, can I
create a label of my specific area of interest, inverse the label
to highlight the rest of the brain, and then either cut out these
regions or make them transparent?

Can anyone help me out?

Thank you,

Allie Rosen, MSc
Graduate Student, Department of Neurosurgery
Toronto Western Hospital 14-327 399 Bathurst St.
University of Toronto
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