I only find flags for mri_normalize and mri_segment in recon-all, and I have trouble reading the contents mri_normalize with a regular text editor. <br>caspar<br><br><br><div class="gmail_quote">2013/5/31 Bruce Fischl <span dir="ltr">&lt;<a href="mailto:fischl@nmr.mgh.harvard.edu" target="_blank">fischl@nmr.mgh.harvard.edu</a>&gt;</span><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Caspar<br>
<br>
it changes some parameters to the intensity normalization and segmentation to account for the lower SNR and increased CNR in the mprage. You&#39;ll need to look in the recon-all script for the details<br>
<br>
cheers<br>
Bruce<div><div class="h5"><br>
<br>
<br>
On Thu, 30 May 2013, Caspar M. Schwiedrzik wrote:<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi!<br>
Is there more documentation on what settings the mprage flag enables in<br>
recon-all?<br>
Specifically, I would be interested which individual steps it affects and<br>
what  the parameters are for each of the steps.<br>
Thanks!<br>
Caspar<br>
<br>
<br>
<br>
</blockquote>
<br>
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