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Hello Daniel.

It looks like you need a slash in front of Volumes for the path after —I
/Volumes

- R.

On Feb 13, 2019, at 14:44, Daniel Davidson Callow <dcallow@umd.edu> wrote:

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Hello,

I am trying to run dt_recon on my dti data using the following script.

dt_recon --debug --i Volumes/DANIEL/tutorial_data/diffusion_recons/${subj}.${cond}/1-65.dcm --s ${subj}.${cond} --o /Volumes/DANIEL/tutorial_data/dtrecon


with the following error

echo "ERROR: cannot find $InputVol"
echo ERROR: cannot find Volumes/DANIEL/tutorial_data/diffusion_recons/AES101.Ex/1-65.dcm
ERROR: cannot find Volumes/DANIEL/tutorial_data/diffusion_recons/AES101.Ex/1-65.dcm
goto error_exit ;

the DICOM files are named image000001.dcm through image000065.dcm

These were 64 gradient images acquired on a SIEMENS scanner with 1 bo image. Any advice on how I should structure this command would be greatly appreciated!

Daniel Callow
PhD Student, Neuroscience and Cognitive Science
Exercise for Brain Health Lab
University of Maryland, College Park
443-254-6298

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