Hello, <br><br>With reference to 
	

this mail-


		
			<h1 style="font-weight: normal;"><font size="2"><span class="subject">Re: [Freesurfer] Extracting ROIs from aparc.a2009s+aseg.mgz</span></font></h1>I tried introducing segments to my image<br><span style="color: rgb(102, 102, 0);">ERROR: Loading Segmentation</span><br style="color: rgb(102, 102, 0);">

<span style="color: rgb(102, 102, 0);">aparc.a2005s+aseg.mgz</span><br style="color: rgb(102, 102, 0);"><span style="color: rgb(102, 102, 0);">Couldn&#39;t import the segmentation volume. Tkmedit wouldn&#39;t read the segmentation you specified. This could be because the segmentation volume wasn&#39;t a valid COR volume directory.</span><br clear="all">

<br><br>The following is what happened in the text shell.<br>s0964091@CRIC-0012:~$ tkmedit jan orig.mgz -segmentation aparc.a2005s+aseg.mgz<br>ERROR: cannot find /home/s0964091/Desktop/jan/mri/aparc.a2005s+aseg.mgz<br>LoadSegmentationVolume main aparc.a2005s+aseg.mgz /usr/local/freesurfer/FreeSurferColorLUT.txt<br>

Reading /usr/local/freesurfer/lib/tcl/tkm_common.tcl<br>Reading /usr/local/freesurfer/lib/tcl/tkm_wrappers.tcl<br>Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl<br>Reading /usr/local/freesurfer/lib/tcl/tkUtils.tcl<br>

% <br><br>So it loaded Orig but without segments. How do I rectify this?<br><br>Thank you.<br><br>