Hello,

If you have T1 images that have been processed with FreeSurfer, you can use the script 'segmentHA_T1.sh' to automatically segment hippocampal subfields.

Best,

Jackson

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of PRASAD D <prasad.duda@ptuniv.edu.in>
Sent: Monday, October 31, 2022 5:32 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Segmentation of hippocampus(left), grey and white matter regions.

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Hello everyone. I’m new to FREESURFER

I would like to segment the sMRI images.

I have extracted(skull stripped) the brain region from the sMRI image using BET.

but i'm interested in hippocampus(left), grey and white matter regions.

Can you please guide me how to segment those specific regions automatically.

Thanks in advance.

Yours sincerely

D.PRASAD

Full Time Research Scholar(QIP)

Dept. of ECE, PTU.