I'm using freesurfer to do retinotopic mapping. I've completed the recon-all, mkanalysis-sess, mri-convert and preproc-sess steps. Now when I run the selxavg3-sess (my subject name is 33333):
"ERROR: /usr/local/freesurfer/subjects/Retinotopy/33333/Retinotopy does not exist"
It seems to look for a Retintopy folder within /Retinotopy/33333/. I suppose the Retinotopy folder should be placed under freesurfer/subjects/ ? Am I missing something here?
Any help would be greatly appreciated.
debian:/usr/local/freesurfer/subjects/Retinotopy# selxavg3-sess -a Retinotopy.33333.lh -s 33333
Surface data self lh
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selxavg3-sess logfile is /usr/local/freesurfer/subjects/Retinotopy/log/selxavg3-sess-Retinotopy-Retinotopy.33333.lh-140617154401.log
--------------------------------------------------------------
preproc-sess -s 33333 -d /usr/local/freesurfer/subjects/Retinotopy -a Retinotopy.33333.lh -nolog
--------------------------------------------------------------
preproc-sess logfile is /dev/null
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$Id: preproc-sess,v 1.45.2.3 2013/01/22 22:09:10 greve Exp $
root
setenv FREESURFER_HOME /usr/local/freesurfer/
setenv SUBJECTS_DIR /usr/local/freesurfer/subjects/Structural
Linux debian 3.2.0-4-486 #1 Debian 3.2.57-3+deb7u1 i686 GNU/Linux
/usr/local/freesurfer/subjects/Retinotopy
/usr/local/freesurfer//fsfast/bin/preproc-sess
-s 33333 -d /usr/local/freesurfer/subjects/Retinotopy -a Retinotopy.33333.lh -nolog
Tue Jun 17 15:44:05 CEST 2014
instem f
mc 1 f fmcpr
stc 0 fmcpr
sm 0
mask 1 brain
33333 Template -----------------------------
mktemplate-sess -s 33333 -d /usr/local/freesurfer/subjects/Retinotopy -fsd Retinotopy -nolog -update
Session: /usr/local/freesurfer/subjects/Retinotopy/33333 ----------------
Tue Jun 17 15:44:06 CEST 2014
ERROR: /usr/local/freesurfer/subjects/Retinotopy/33333/Retinotopy does not exist