Our mkanalysis-sess command:

mkanalysis-sess -analysis mandylh2 -surface fsaverage lh -fwhm 8 -event-related -paradigm paradigm.par -TR 3 -nconditions 2 -runlistfile task -gammafit 2.25 1.25 -refeventdur 30

Our paradigm file:

0       0    30    1    Rest
30     1    30    1    Typing
60     0    30    1    Rest
90     1    30    1    Typing
120    0    30    1    Rest
150    1    30    1    Typing
180    0    30    1    Rest
210    1    30    1    Typing
240    0    30    1    Rest
270    1    30    1    Typing
300    0    30    1    Rest
330    1    30    1    Typing
360    0    30    1    Rest
390    1    30    1    Typing
420    0    30    1    Rest
450    1    30    1    Typing
480    0    30    1    Rest
510    1    30    1    Typing
540    0    30    1    Rest
570    1    30    1    Typing
600    0    30    1    Rest
630    1    30    1    Typing
660    0    30    1    Rest
690    1    30    1    Typing
720    0    30    1    Rest

Thanks!
--Mandy

On Mon, Feb 14, 2011 at 10:20 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
Usually this means that there is something wrong with your design or paradigm files. CAn you send the paradigm files and the mkanalysis-sess command?
doug

Mandy Nagy wrote:
Hello,

We are attempting to run an analysis using selxavg3-sess but keep getting an error.
We are using:

freesurfer v5

Our subjects directory: /cluster/manoach/milton/subjects

Command that was run:

selxavg3-sess -analysis mandylh2 -fwhm -s PAMST06

Output that was given:

Creating Design Matrix
 ... creation time =  0.006 sec
DoMCFit = 1
ntptot = 250, nX = 5, DOF = 245
Saving X matrix to /autofs/cluster/manoach/milton/subjects/PAMST06/bold/mandylh2/Xtmp.mat
??? Error using ==> svd
Input to SVD must not contain NaN or Inf.

Error in ==> cond at 40
  s = svd(A);

Error in ==> fast_selxavg3 at 256
 XCond = cond(XtX);

>> ------------------------------------------
ERROR: fast_selxavg3() failed\n


Do you know what might cause this?

Thanks!
--Mandy
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
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