Hello,<div><br></div><div>We have some signal dropout at the top of the brain in some of our scans.</div><div>Because of that, the gray/white boundary is not very accurate at the top. The</div><div>gm tends to be too thick because some of the darkened wm is classified as gm.</div>
<div>What particular parameters can we experiment with to correct for this? I am guessing</div><div>that some things in nu_correct and/or mri_normalize should be adjusted, but what</div><div>specifically would you recommend? This anatomy is an average of two scans</div>
<div>and the FS version is freesurfer-Darwin-tiger-i686-stable-pub-v3.0.5.</div><div><br></div><div>thanks,</div><div>Rutvik</div><div><br></div><div><br></div><div><img src="webkit-fake-url://D974F9E1-4A6C-487D-BBAF-442E24FBE00E/image.tiff"></div>
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