Hi Bruce,

I am trying to create a mesh of the MRI scans, eventually with imported scans, but for now just using the information available through the software. How do you work these voxel segmentations? I'm just very new with the software.

Say I import an MRI scan, and I want to cortically segment it in order to create a mesh of the volume. What are the steps to do this and how do I follow through with each step? I tried to watch the youtube tutorials on the Freesurfer youtube, but since they are slides informing of what Freesurfer can do and not quite a play-by-play interaction of Freeview, I am stuck.

Thanks

Abbie

On Mon, Jun 27, 2016 at 3:30 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
Hi Abbie

what are you trying to create a mesh of? We supply meshes for the
gray/white interface and for the pial surface. We supply voxel
segmentations of lots of other things that you could mesh, but we don't
by default.

cheers
Bruce
On Mon, 27 Jun 2016, Abbie McNulty wrote:

> Hello,
> I am trying to segment a MRI brain in order to create a mesh of the image
> into finite elements, but I am very new with Freesurfer/Freeview and am not
> familiar with the tools. So far, I have only uploaded brain.mgt from the
> bert file that comes with the program. If I wanted to mesh this brain, how
> should I proceed? The online tutorials have confused me especially since I
> am not sure if I am supposed to be using the terminal or the command window
> for a lot of the code commands.
>
> Any help would be appreciated.
>
> Thanks!
>
> Abbie McNulty
>
> --
> Abigail C. McNulty
> Stanford University Class of 2018
> B.A. Candidate in Bioengineering
> Stanford Women's XC/ Track and Field
>
>
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--
Abigail C. McNulty
Stanford University Class of 2018
B.A. Candidate in Bioengineering
Stanford Women's XC/ Track and Field