Dear Freesurfer experts


I was running recon-all command with hires flag for our high resolution fMRI data, but it has been in a constant status since yesterday.

I copied the last few lines that are currently in my terminal. I had the same issue with another subject before, and I had to terminate the recon-all and run it without -hires.

Could you please let me know how I can solve this issue?


Thanks

Mona



#@# Fix Topology Copy rh Wed Feb 20 19:50:00 EST 2019
/autofs/space/oprah_001/users/jvm27/looming/SUBJECTS_DIR/inul_loom2_7T/scripts

 cp ../surf/rh.orig.nofix ../surf/rh.orig 


 cp ../surf/rh.inflated.nofix ../surf/rh.inflated 

#@# Fix Topology lh Wed Feb 20 19:50:03 EST 2019

 mris_fix_topology -rusage /autofs/space/oprah_001/users/jvm27/looming/SUBJECTS_DIR/inul_loom2_7T/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 inul_loom2_7T lh 

#@# Fix Topology rh Wed Feb 20 19:50:03 EST 2019

 mris_fix_topology -rusage /autofs/space/oprah_001/users/jvm27/looming/SUBJECTS_DIR/inul_loom2_7T/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 inul_loom2_7T rh 

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