Dear freesurfer-mailinglist,


I'm struggling since a few days with a problem I can't resolve: I ran recon-all without errors on my data and got the surfaces. Now I want to display surf/l(r)h.pial and mri/T1.mgz (or /orig/001.mgz) together to check the result in slicer3 (3.61.0). The problem occurring is, that any surface and the original volumes do not fit together - there is a small shift of the surfaces to the front. I already tried to apply transforms from mri/transform to the T1.mgz but nothing solved that issue.


here is a screen shot of my problem:  http://dl.dropbox.com/u/1263357/problem.png

What am I doing wrong?

 

Thank you for any hint in advance
Best Regards
Steffen