Dear FreeSurfer users,
I am trying to add a per-vertex
regressor in my general lineal model (a cortical thickness
analysis with the white matter-grey matter contrast
parameter as regressor). I have no problems with the command
line mri_glmfit:
mri_glmfit --y
rh.cth_corr_MMSE.mgh --fsgd cth_corr_MMSE.fsgd dods --C
PDcorr.mtx --pvr rh.wgc_corr_MMSE.mgh --surf fsaverage rh
--cortex --glmdir rh.cth_corr_MMSE.glmdir
But when I try to run
mri_glmfit-sim I think it doesn't consider the regressor (mri_glmfit-sim
--glmdir lh.cth_corr_MMSE.glmdir/ --cache 1.3 abs) because
I get this warning:
WARNING: unrecognized
mri_glmfit cmd option --pvr
WARNING: unrecognized
mri_glmfit cmd option rh.wgc_corr_MMSE.mgh
How can I run the
simulation with the regressor?
Thank you very much for
your help,
Carme