What was the error message?

Peace,

Matt.

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of John Anderson <j.anderson@publicist.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Sunday, June 11, 2017 at 9:06 AM
To: <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] difference in T1 and T2 resolution

Dear Freesurfer experts,
I have T1 and T2 images were unfortunately acquired with different resolution (i.e the voxel sizes is not the same)
T1 is 280X280X208
T2 is 270X270X200

I tried to run "recon-all"  but it failed to process the data. The command that I used is :
pbsubmit -c " recon-all -subjid subj1 -T2  PATH_TO_/T2.nii.gz -qcache -T2pial -all" 
 
How can I analyze these images? Is it a correct procedure to conform the voxels using "mri_convert". Is this procedure correct? does it hurt the anatomy of the images?
 
I highly appreciate your help 
John
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