Dear Chuyue,

It’s very posible that you ran out of RAM. I think you need about 32GB to run this module. Do you think that could be the problem?

Cheers,

/Eugenio

--

Juan Eugenio Iglesias

http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of 赵楚越 <zhaochuyue21@mails.ucas.ac.cn>
Date: Thursday, December 21, 2023 at 04:17
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Killed procees during running WMH-SynthSeg

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Dear freesurfer experts,

I have installed the develpment version of FreeSurfer on WSL with UNbuntu 20.04, when I try to run WMH-SynthSeg with mri_WMHsynthseg --i WMHsynthsegTset/ --o WMHsynthsegTset/ but the proceess seemed killed and nothing produced in the output directory. Would you recommend what I should change? Thank you so much! Following is the ouput in the commomand line window.

Arguments seem correct; loading Python packages...

Using cpu

Using 1 thread(s)

Preparing model and loading weights

Working on image 1 of 1: WMHsynthsegTset/T1_1.nii

     Loading input volume and normalizing to [0,1]

     Upscaling to target resolution

     Pushing data through the CNN

Killed

Best,

Chuyue