Hi,

I am a little confused about how should I save my files to execute recon-all on them. I have 240 slices of dicom format and I put them in a folder in my subjects_dir. but I get errors when using recon-all on the folder containing the MRIs. Can you help me with that? I really appreciate your help

Thank you

Dorsa

On Mon, Jun 27, 2016 at 3:13 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
Hi Dorsa

what specific models do you need? The 10-20 hours is to process the data
from a single subject at a single timepoint. If you check out our wiki
(http://surfer.nmr.mgh.harvard.edu/fswiki) there are lots of tutorials and
sample datasets and such

cheers
Bruce

On Mon, 27 Jun 2016, Dorsa Haji
Ghaffari wrote:

> Hi,
> I am graduate student at the University of Michigan and I am performing
> research on deep brain stimulation. I want to warp an anatomical brain atlas
> to individual patient MRIs to get the patient specific brain models out of
> it. I chose FreeSurfer to do this and I have installed it on my computer. I
> realized that it takes 10-20 hrs to reconstruct the image. I wanted to ask
> if that is the time for one image? or the whole series of images?
> I also wanted to ask if there is a step by step tutorial on how to do this.
>
> Thank you
>
> Dorsa Ghaffari
>
>
>
>
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