Hi,

I'm getting an error trying to coregister a ct.nii and a orig.mgz file.

The subjects directory is: /autofs/space/multnomah_002/users/Cashlab/BW10

Working directory: /autofs/space/multnomah_002/users/Cashlab/BW10/BW10_Pre_Op_MRI

"which spmregister" outputs this: /usr/local/freesurfer/stable4/bin/spmregister

I'm using the following command:

[multnomah:BW10_Pre_Op_MRI] (nmr-std-env) spmregister --s BW10_Pre_Op_MRI --mov ct.nii --reg spm.reg.dat --fsvol orig

I get the following error:

>> >> >> ERROR: spm_coreg
>> ??? Undefined function or variable 'x'.

>> Finished after 0.023302 sec
>> >> Parameters >> ??? Undefined function or variable 'x'.

>>
>> >> >> >> ??? Undefined function or variable 'x'.

>> >> Using spm_get_space
??? Undefined variable "VF" or class "VF.fname".

>> >> >> ERROR: matlab exited with errors
ERROR: cannot find spm_coreg.m. Make sure that the SPM
package is in your matlab path (check ~/matlab/startup)
ERROR: spm_coreg

My environment information is:

-------- freesurfer-Linux-centos4-stable-v4.3.0-20090516 --------

Setting up environment for FreeSurfer/FS-FAST (and FSL)

FREESURFER_HOME /usr/local/freesurfer/stable4

FSFAST_HOME /usr/local/freesurfer/stable4/fsfast

FSF_OUTPUT_FORMAT nii

SUBJECTS_DIR /space/sake/3/users/inverse/subjects

MNI_DIR /usr/local/freesurfer/stable4/mni

FSL_DIR /usr/pubsw/packages/fsl/current

The SPM package used to work a few weeks ago. Did something change?

Thanks!
Rodrigo