Hi everyone,
I am using freesurfer version 4.5.0, and have just gotten an error message that I have never received before. The end of the recon-all script is pasted below. what does this mean?
#@# Skull Stripping Mon Apr 5 15:06:52 EDT 2010
/home/fs01/kab2003/FS/133_S_0525/mri
mri_watershed -T1 T1.mgz brainmask.auto.mgz
Mode: T1 normalized volume
*********************************************************
The input file is T1.mgz
The output file is brainmask.auto.mgz
If this is incorrect, please exit with CTL-C
*************************WATERSHED**************************
Sorting...
T1-weighted MRI image
modification of the preflooding height to 15 percent
Count how many 110 voxels are present : 20676
Find the largest 110-component...
heap usage = 128720 Kbytes.
removing small segments (less than 1 percent of maxarea).done
And identify it as the main brain basin...done
Main component: 6553 voxels
first estimation of the COG coord: x=124 y=177 z=184 r=110
first estimation of the main basin volume: 5673266 voxels
mri_watershed Error:
Problem with WM_MIN too small
Linux compute-3-14.v4linux 2.6.18-164.6.1.el5 #1 SMP Tue Oct 27 11:28:30 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Apr 5 15:06:54 EDT 2010
Thanks,
Dana