Hi Barbara,

Yes, you can use recon-all-clinical for the enhanced T1. But, the surface reconstruction might fail and in that case, you might have to try running SynthSR + recon-all.

Thank you,
Karthik

On Jun 13, 2024, at 1:30 AM, Barbara Bellenberg <Barbara.Bellenberg@ruhr-uni-bochum.de> wrote:

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Dear all,

I would like to use the recon-all-clinical pipeline with Gadolinium
contrast-enhanced 3D-T1 weighted images. Can you tell me if
recon-all-clinical is suitable for this purpose?

Thanks in adcance for your support!

Barbara


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