I have T1volume+org.BRIK  - should I use those with mri_convert?

Thanks again,

Jesse

On Tue, Nov 24, 2009 at 4:23 PM, Saad, Ziad S. (NIH/NIMH) [E] <saadz@mail.nih.gov> wrote:
mri_convert usually work with BRIK files.

Alternately, 3dAFNItoNIFTI  could turn BRIK files to nifti format
which FreeSurfer can read fine.

cheers,
ziad

On Nov 24, 2009, at 3:28 PM, Bruce Fischl wrote:

> These are not the standard .BRIK files? Ziad (ccd) will know.
>
> Bruce
>
>
> On Tue, 24 Nov 2009, Jesse Bledsoe wrote:
>
>> Hello,
>>
>> So far I have had no problems running recon-all with .mnc files but
>> could
>> use some guidance converting/reconstructing brains processed with
>> AFNI
>> (MRDC).
>>
>> There are 120 MRDC files in the T1 directory.
>>
>> I believe I need to run mri_convert on these MRDC files but am
>> unsure of
>> what the correct command would be?
>>
>> Thanks in advance,
>>
>> Jesse
>>




--
Jesse Bledsoe, M.A.
Clinical Psychology
Assistant Director, Center for Neurodevelopmental Study
Department of Psychiatry
Michigan State University
321 W. Fee Hall
East Lansing, MI 48824
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