Hi Fatma

are you sure you don't have a typo in the path? Can you run ls -l on that file?
Bruce

On Wed, 10 Jul 2013, fatma zribi wrote:

---------- Forwarded message ----------
From: fatma zribi <zribi.fatma@gmail.com>
Date: 2013/7/10
Subject: Re: [Freesurfer] how to use mris_register?
To: Bruce Fischl <fischl@nmr.mgh.harvard.edu>


Hi Bruce,

Thank you very much for your help but it still don't work.

mris_register  s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere  avg_all_subjects_SD/lh.reg.template.tif  lh.sphere_reg

$Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $
reading surface from s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere...
MRISread(s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere): could not open file
No such file or directory
mris_register: could not read surface file s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere
No such file or directory

note that the file exist in the folder and i have changed the SUBJECT_DIR to the appropriate folder

Thank you very much for your help

with best regards,

Fatma



2013/7/9 Bruce Fischl <fischl@nmr.mgh.harvard.edu>
      Hi Fatma

      don't use the -1 flag if you are regtering to a template, only if you are registering individual surfaces to each
      other. You probably want the output to be named lh.sphere_reg and go in the  s000/surf dir.

      cheers
      Bruce

      On Tue, 9 Jul 2013, fatma zribi wrote:

            Dear Mr,

            When I execute mris_register to register one subject to a template., I have this message of error:

            mris_register -1  s000/surf/lh.sphere  avg_all_subjects_SD/lh.reg.template.tif sphere_reg
            treating target as a single subject's surface...
            $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $
              $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $
            reading surface from s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere...
            MRISread(s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere): could not open file
            No such file or directory
            mris_register: could not read surface file s000/surf/lh.sphere
            No such file or directory

            note that the file exist in the specifeid SUBJECT_DIR

            Thank you for your help

            Fatma





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