You can find information about recon-all process here https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all

Add ‘-finalsurfs’ to you recon-all command line options.

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Faraz Yazdanibanafshedaragh
Sent: Wednesday, February 15, 2023 3:58 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] recon-all does not produce ?h.white files

        External Email - Use Caution        

Hello,

When I use the command recon-all  -autorecon2-wm -subjid ${tmp_subj} -noaseg -xopts-use I only get ?h.white.K and ?h.white.H files, but not the ?h.white file that I need for mri_vol2surf script (so it exits with error). What am I doing wrong?

Thank you