On Tue, Oct 21, 2014 at 11:39 AM, Thomas DeRamus <tpderamus@gmail.com> wrote:

It says the label flag is unrecognized.

mri_glmfit-sim --glmdir rh.ALESocial__agevolume.glmdir --cache-dir /media/rkbatch/gyrification/fsaverage/mult-comp-cor/ --label rh.Socialbrain
ERROR: Flag --label unrecognized.
--glmdir rh.ALESocial__agevolume.glmdir --cache-dir /media/rkbatch/gyrification/fsaverage/mult-comp-cor/ --label rh.Socialbrain

On Tue, Oct 21, 2014 at 11:30 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
I think you need to pass it
--cache-dir /media/rkbatch/gyrification/fsaverage/mult-comp-cor --label
rh.SocialBrainMask

doug

On 10/21/2014 10:31 AM, Thomas DeRamus wrote:
> How do I change the path so that it's reading from the label I made
> (Socialbrain) in lieu of the cortex?
>
> On Mon, Oct 20, 2014 at 5:42 PM, Thomas DeRamus <tpderamus@gmail.com

> <mailto:tpderamus@gmail.com>> wrote:
>
> That one gives the following error:
>
> mri_glmfit-sim --glmdir rh.ALESocial__agevolume.glmdir --cache-dir
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/
> --cache 2 abs
> cmdline mri_glmfit --y rh.diagnosisxageICVslopetest.volume.10.mgh
> --fsgd SBM_glmVolumeNOGENDER.fsgd dods --C
> diagnosisnonlGIICmeas.mtx --C agesxdiagnosisnonlGI.mtx --C
> diagnosisnonxagexICmeas.mtx --C ICmeasurexdiagnosisnonlGI.mtx
> --surf fsaverage rh --label
> /media/rkbatch/gyrification/fsaverage/label/rh.SocialBrainMask
> --glmdir rh.ALESocial__agevolume.glmdir
> SURFACE: fsaverage rh
> log file is rh.ALESocial__agevolume.glmdir/cache.mri_glmfit-sim.log
>
> cd /media/rkbatch/gyrification
> /usr/local/freesurfer/bin/mri_glmfit-sim
> --glmdir rh.ALESocial__agevolume.glmdir --cache-dir
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/
> --cache 2 abs
>
> $Id: mri_glmfit-sim,v 1.36.2.5 2012/10/01 22:31:37 greve Exp $
> Mon Oct 20 17:39:34 CDT 2014
> Linux waffle 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:39:51
> UTC 2012 x86_64 x86_64 x86_64 GNU/Linux
> tderamus
> setenv SUBJECTS_DIR /media/rkbatch/gyrification
> FREESURFER_HOME /usr/local/freesurfer
>
> Original mri_glmfit command line:
> cmdline mri_glmfit --y rh.diagnosisxageICVslopetest.volume.10.mgh
> --fsgd SBM_glmVolumeNOGENDER.fsgd dods --C
> diagnosisnonlGIICmeas.mtx --C agesxdiagnosisnonlGI.mtx --C
> diagnosisnonxagexICmeas.mtx --C ICmeasurexdiagnosisnonlGI.mtx
> --surf fsaverage rh --label
> /media/rkbatch/gyrification/fsaverage/label/rh.SocialBrainMask
> --glmdir rh.ALESocial__agevolume.glmdir
>
> DoSim = 0
> UseCache = 1
> DoPoll = 0
> DoPBSubmit = 0
> DoBackground = 0
> DiagCluster = 0
> gd2mtx = dods
> fwhm = 14.594354
> ERROR: cannot find
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain//fsaverage/rh/cortex/fwhm15/abs/th20/mc-z.csd
>
>
> It looks like its still trying to use the cached monte-carlo from
> the fsaverage rather than the one for the label. Am I using
> --cache-dir correctly?
>
> On Mon, Oct 20, 2014 at 5:34 PM, Douglas N Greve

> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
>
> you need to add --cache threshold sign (and don't use
> --sim-sign or --sim)
>
> On 10/20/2014 05:42 PM, Thomas DeRamus wrote:
> > It does not I'm afraid. The error I get says the following:
> >
> > mri_glmfit-sim --glmdir rh.ALESocial__agevolume.glmdir
> --cache-dir
> >
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/
> > --sim-sign abs --2spaces
> > ERROR: must spec --sim
> >
> > Does the same if I remove the --sim-sign abs as well.
> >
> > On Mon, Oct 20, 2014 at 3:15 PM, Douglas N Greve
> > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>

> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
> >
> >
> > You should not spec --sim. If you do not, does it work?
> > doug
> >
> > On 10/20/2014 04:10 PM, Thomas DeRamus wrote:
> > > I guess the better term would be to say that I'm not
> sure if the
> > > cluster correction is using the monte-carlo I made
> from the
> > label file
> > > correctly.
> > >
> > > I see on the wiki and in the mailing list you can use
> a different
> > > directory and then spec that folder using
> mri_glmfit-sim with the
> > > --cache-dir flag. When I run it like that, I get this
> output
> > > mri_glmfit-sim --glmdir rh.ALESocial__agevolume.glmdir
> --cache-dir
> > >
> >
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/
> > > --cwp 0.05 --2spaces --sim
> > > ERROR: flag --sim requires four arguments
> > >
> > > When I specify the sim (which I'm not sure I need
> since I ran the
> > > simulation already) and sim-sign abs, and run either
> of the
> > following,
> > > I get these as outputs:
> > >
> > > mri_glmfit-sim --glmdir rh.ALESocial__agevolume.glmdir
> --sim mc-z
> > > 10000 2
> > >
> >
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/
> > > --sim-sign abs --2spacescmdline mri_glmfit --y
> > > rh.diagnosisxageICVslopetest.volume.10.mgh --fsgd
> > > SBM_glmVolumeNOGENDER.fsgd dods --C
> diagnosisnonlGIICmeas.mtx --C
> > > agesxdiagnosisnonlGI.mtx --C
> diagnosisnonxagexICmeas.mtx --C
> > > ICmeasurexdiagnosisnonlGI.mtx --surf fsaverage rh --label
> > >
> /media/rkbatch/gyrification/fsaverage/label/rh.SocialBrainMask
> > > --glmdir rh.ALESocial__agevolume.glmdir
> > > SURFACE: fsaverage rh
> > > log file is
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > >
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > cd /media/rkbatch/gyrification
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > /usr/local/freesurfer/bin/mri_glmfit-sim
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > --glmdir rh.ALESocial__agevolume.glmdir --sim mc-z 10000 2
> > >
> >
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/
> > > --sim-sign abs --2spaces
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > >
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > $Id: mri_glmfit-sim,v 1.36.2.5 2012/10/01 22:31:37
> greve Exp $
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > Mon Oct 20 15:06:19 CDT 2014
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > Linux waffle 3.2.0-23-generic #36-Ubuntu SMP Tue Apr
> 10 20:39:51 UTC
> > > 2012 x86_64 x86_64 x86_64 GNU/Linux
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > tderamus
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > setenv SUBJECTS_DIR /media/rkbatch/gyrification
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > FREESURFER_HOME /usr/local/freesurfer
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > >
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > Original mri_glmfit command line:
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > cmdline mri_glmfit --y
> rh.diagnosisxageICVslopetest.volume.10.mgh
> > > --fsgd SBM_glmVolumeNOGENDER.fsgd dods --C
> diagnosisnonlGIICmeas.mtx
> > > --C agesxdiagnosisnonlGI.mtx --C
> diagnosisnonxagexICmeas.mtx --C
> > > ICmeasurexdiagnosisnonlGI.mtx --surf fsaverage rh --label
> > >
> /media/rkbatch/gyrification/fsaverage/label/rh.SocialBrainMask
> > > --glmdir rh.ALESocial__agevolume.glmdir
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > >
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > DoSim = 1
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > UseCache = 0
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > DoPoll = 0
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > DoPBSubmit = 0
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > DoBackground = 0
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > DiagCluster = 0
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > gd2mtx = dods
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > fwhm = 14.594354
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > nSimPerJob = 10000
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > 1/1 Mon Oct 20 15:06:19 CDT 2014
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > mri_glmfit --y
> > >
> >
> /media/rkbatch/gyrification/rh.diagnosisxageICVslopetest.volume.10.mgh
> > > --C
> > >
> >
> rh.ALESocial__agevolume.glmdir/tmp.mri_glmfit-sim-20978/agesxdiagnosisnonlGI.mtx
> > > --C
> > >
> >
> rh.ALESocial__agevolume.glmdir/tmp.mri_glmfit-sim-20978/diagnosisnonlGIICmeas.mtx
> > > --C
> > >
> >
> rh.ALESocial__agevolume.glmdir/tmp.mri_glmfit-sim-20978/diagnosisnonxagexICmeas.mtx
> > > --C
> > >
> >
> rh.ALESocial__agevolume.glmdir/tmp.mri_glmfit-sim-20978/ICmeasurexdiagnosisnonlGI.mtx
> > > --mask rh.ALESocial__agevolume.glmdir/mask.mgh --sim
> mc-z 10000 2
> > >
> >
> rh.ALESocial__agevolume.glmdir/csd//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.j001
> > > --sim-sign abs --fwhm 14.594354 --fsgd
> > > rh.ALESocial__agevolume.glmdir/y.fsgd dods --label
> > >
> /media/rkbatch/gyrification/fsaverage/label/rh.SocialBrainMask
> > --surf
> > > fsaverage rh white
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.mri_glmfit-sim.log:
> > > No such file or directory
> > > INFO: ignoring tag Creator
> > > INFO: ignoring tag SUBJECTS_DIR
> > > INFO: ignoring tag SynthSeed
> > > MatrixMultiply: m1 is null!
> > >
> > > No such file or directory
> > > simbase
> > >
> >
> rh.ALESocial__agevolume.glmdir/csd//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/.j001
> > > FWHM = 14.594354
> > > gdfReadHeader: reading
> rh.ALESocial__agevolume.glmdir/y.fsgd
> > > INFO: NOT demeaning continuous variables
> > > Continuous Variable Means (all subjects)
> > > 0 Age 18.4329 6.76585
> > > 1 tICV 1.67822e+06 146117
> > > Class Means of each Continuous Variable
> > > 1 CTRL 18.2315 1690205.3333
> > > 2 ASD 18.6525 1665138.7273
> > >
> > > mri_glmfit-sim --glmdir rh.ALESocial__agevolume.glmdir
> --sim mc-z
> > > 10000 2
> > >
> >
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd
> > > --sim-sign abs --2spaces
> > > cmdline mri_glmfit --y
> rh.diagnosisxageICVslopetest.volume.10.mgh
> > > --fsgd SBM_glmVolumeNOGENDER.fsgd dods --C
> diagnosisnonlGIICmeas.mtx
> > > --C agesxdiagnosisnonlGI.mtx --C
> diagnosisnonxagexICmeas.mtx --C
> > > ICmeasurexdiagnosisnonlGI.mtx --surf fsaverage rh --label
> > >
> /media/rkbatch/gyrification/fsaverage/label/rh.SocialBrainMask
> > > --glmdir rh.ALESocial__agevolume.glmdir
> > > SURFACE: fsaverage rh
> > > log file is
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > >
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > cd /media/rkbatch/gyrification
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > /usr/local/freesurfer/bin/mri_glmfit-sim
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > --glmdir rh.ALESocial__agevolume.glmdir --sim mc-z 10000 2
> > >
> >
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd
> > > --sim-sign abs --2spaces
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > >
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > $Id: mri_glmfit-sim,v 1.36.2.5 2012/10/01 22:31:37
> greve Exp $
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > Mon Oct 20 15:04:37 CDT 2014
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > Linux waffle 3.2.0-23-generic #36-Ubuntu SMP Tue Apr
> 10 20:39:51 UTC
> > > 2012 x86_64 x86_64 x86_64 GNU/Linux
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > tderamus
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > setenv SUBJECTS_DIR /media/rkbatch/gyrification
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > FREESURFER_HOME /usr/local/freesurfer
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > >
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > Original mri_glmfit command line:
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > cmdline mri_glmfit --y
> rh.diagnosisxageICVslopetest.volume.10.mgh
> > > --fsgd SBM_glmVolumeNOGENDER.fsgd dods --C
> diagnosisnonlGIICmeas.mtx
> > > --C agesxdiagnosisnonlGI.mtx --C
> diagnosisnonxagexICmeas.mtx --C
> > > ICmeasurexdiagnosisnonlGI.mtx --surf fsaverage rh --label
> > >
> /media/rkbatch/gyrification/fsaverage/label/rh.SocialBrainMask
> > > --glmdir rh.ALESocial__agevolume.glmdir
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > >
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > DoSim = 1
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > UseCache = 0
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > DoPoll = 0
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > DoPBSubmit = 0
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > DoBackground = 0
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > DiagCluster = 0
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > gd2mtx = dods
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > fwhm = 14.594354
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > nSimPerJob = 10000
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > 1/1 Mon Oct 20 15:04:37 CDT 2014
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > mri_glmfit --y
> > >
> >
> /media/rkbatch/gyrification/rh.diagnosisxageICVslopetest.volume.10.mgh
> > > --C
> > >
> >
> rh.ALESocial__agevolume.glmdir/tmp.mri_glmfit-sim-20856/agesxdiagnosisnonlGI.mtx
> > > --C
> > >
> >
> rh.ALESocial__agevolume.glmdir/tmp.mri_glmfit-sim-20856/diagnosisnonlGIICmeas.mtx
> > > --C
> > >
> >
> rh.ALESocial__agevolume.glmdir/tmp.mri_glmfit-sim-20856/diagnosisnonxagexICmeas.mtx
> > > --C
> > >
> >
> rh.ALESocial__agevolume.glmdir/tmp.mri_glmfit-sim-20856/ICmeasurexdiagnosisnonlGI.mtx
> > > --mask rh.ALESocial__agevolume.glmdir/mask.mgh --sim
> mc-z 10000 2
> > >
> >
> rh.ALESocial__agevolume.glmdir/csd//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.j001
> > > --sim-sign abs --fwhm 14.594354 --fsgd
> > > rh.ALESocial__agevolume.glmdir/y.fsgd dods --label
> > >
> /media/rkbatch/gyrification/fsaverage/label/rh.SocialBrainMask
> > --surf
> > > fsaverage rh white
> > > tee:
> > >
> >
> rh.ALESocial__agevolume.glmdir//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.mri_glmfit-sim.log:
> > > No such file or directory
> > > INFO: ignoring tag Creator
> > > INFO: ignoring tag SUBJECTS_DIR
> > > INFO: ignoring tag SynthSeed
> > > MatrixMultiply: m1 is null!
> > >
> > > No such file or directory
> > > simbase
> > >
> >
> rh.ALESocial__agevolume.glmdir/csd//media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain/fwhm13/abs/th20/mc-z.csd.j001
> > > FWHM = 14.594354
> > > gdfReadHeader: reading
> rh.ALESocial__agevolume.glmdir/y.fsgd
> > > INFO: NOT demeaning continuous variables
> > > Continuous Variable Means (all subjects)
> > > 0 Age 18.4329 6.76585
> > > 1 tICV 1.67822e+06 146117
> > > Class Means of each Continuous Variable
> > > 1 CTRL 18.2315 1690205.3333
> > > 2 ASD 18.6525 1665138.7273
> > >
> > > Since the directory and flags are returning errors,
> I'm assuming I'm
> > > just inputing everything incorrectly or its a path
> issue. Does
> > that help?
> > >
> > > On Mon, Oct 20, 2014 at 2:53 PM, Douglas N Greve
> > > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
> > >
> > >
> > > what do you mean it has trouble understanding?
> What is your
> > > command line
> > > and terminal output. Also, are you following these
> instructions?
> > >
> > >
> https://surfer.nmr.mgh.harvard.edu/fswiki/BuildYourOwnMonteCarlo
> > >
> > >
> > > On 10/20/2014 03:50 PM, Thomas DeRamus wrote:
> > > > Dear Freesurfer Experts,
> > > >
> > > > I have a label file of a number of ROI's I've
> made based
> > on a mask.
> > > > I'm trying to get an idea of what cluster are
> significant
> > within a
> > > > focused region of the label file.
> > > >
> > > > To make the correction a little less sever, I
> pre-computed
> > some
> > > > monte-carlo values using mri_mcsim
> > > >
> > > > mri_mcsim --o
> > > >
> > >
> >
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/rh/Socialbrain
> > > > --base mc-z --surface fsaverage rh --nreps 10000
> --label
> > > >
> /media/rkbatch/gyrification/fsaverage/label/rh.SocialBrainMask
> > > >
> > > > mri_mcsim --o
> > > >
> $SUBJECTS_DIR/fsaverage/mult-comp-cor/fsaverage/lh/Socialbrain
> > > --base
> > > > mc-z --surface fsaverage lh --nreps 10000 --label
> > > > $SUBJECTS_DIR/fsaverage/label/lh.SocialBrainMask
> > > >
> > > > Respectively for each surface (the labels are
> different on
> > each
> > > > hemisphere).
> > > >
> > > > I've run mri_glmfit and have the uncorrected
> outputs and
> > results
> > > > (there are actually 6 of these, one for volume,
> thickness, and
> > > surface
> > > > area for each hemi):
> > > >
> > > > mri_glmfit --y
> > rh.diagnosisxagexrightThickslopetest.thickness.10.mgh
> > > > --fsgd SBM_glmRightthickNOGENDER.fsgd dods --C
> > > > diagnosisnonlGIICmeas.mtx --C
> agesxdiagnosisnonlGI.mtx --C
> > > > diagnosisnonxagexICmeas.mtx --C
> > ICmeasurexdiagnosisnonlGI.mtx --surf
> > > > fsaverage rh --label
> > > >
> /media/rkbatch/gyrification/fsaverage/label/rh.SocialBrainMask
> > > > --glmdir rh.ALESocial__agethickness.glmdir
> > > >
> > > > But when I try to do the mri_glmfit-sim, I am having
> > trouble getting
> > > > it to read in the corrected csd file.
> > > >
> > > > I'm wanting to run it at cwp of 0.05 at a
> threshold of 2
> > (0.01),
> > > with
> > > > a correction for two hemispheres. However, when
> I try to
> > run it with
> > > > --cache-dir
> > > >
> > >
> >
> /media/rkbatch/gyrification/fsaverage/mult-comp-cor/fsaverage/lh/Socialbrain
> > > > , it has trouble understanding the --cwp .05,
> --2spaces
> > and 2 abs
> > > > (after cache dir) flags. Additionally, it wants
> a --sim and
> > > --sim-sign
> > > > value like it wants to compute a monte-carlo
> from scratch.
> > > >
> > > > Could I get an example on how best to direct it
> to the
> > > simulation I've
> > > > run on it?
> > > >
> > > > Thanks much.
> > > > -Thomas
> > > >
> > > >
> > > > --
> > > > *Thomas DeRamus*
> > > > UAB Department of Psychology, Behavioral
> Neuroscience
> > > > Graduate Research Trainee
> > > > Civitan International Research Center
> > > > 1719 6th Ave S, Suite 235J, Birmingham, AL 35233
> > > > _Phone_: 205-934-0971 <tel:205-934-0971>
> <tel:205-934-0971 <tel:205-934-0971>> <tel:205-934-0971
> <tel:205-934-0971>

> > <tel:205-934-0971 <tel:205-934-0971>>> <tel:205-934-0971

> <tel:205-934-0971> <tel:205-934-0971 <tel:205-934-0971>>
> > > <tel:205-934-0971 <tel:205-934-0971>
> <tel:205-934-0971 <tel:205-934-0971>>>> _Email:_
> tpderamus@gmail.com <mailto:tpderamus@gmail.com>
> > <mailto:tpderamus@gmail.com <mailto:tpderamus@gmail.com>>
> > > <mailto:tpderamus@gmail.com
> <mailto:tpderamus@gmail.com> <mailto:tpderamus@gmail.com
> <mailto:tpderamus@gmail.com>>>
> > > > <mailto:tpderamus@gmail.com
> <mailto:tpderamus@gmail.com> <mailto:tpderamus@gmail.com
> <mailto:tpderamus@gmail.com>>
> > <mailto:tpderamus@gmail.com <mailto:tpderamus@gmail.com>
> <mailto:tpderamus@gmail.com <mailto:tpderamus@gmail.com>>>>,
> > > faustus@uab.edu <mailto:faustus@uab.edu>
> <mailto:faustus@uab.edu <mailto:faustus@uab.edu>>
> <mailto:faustus@uab.edu <mailto:faustus@uab.edu>
> > <mailto:faustus@uab.edu <mailto:faustus@uab.edu>>>
> <mailto:faustus@uab.edu <mailto:faustus@uab.edu>
> > <mailto:faustus@uab.edu <mailto:faustus@uab.edu>>
> > > <mailto:faustus@uab.edu <mailto:faustus@uab.edu>
> <mailto:faustus@uab.edu <mailto:faustus@uab.edu>>>>
> > > >
> > > >
> > > > _______________________________________________
> > > > Freesurfer mailing list
> > > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > >
> >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > >
> > > --
> > > Douglas N. Greve, Ph.D.
> > > MGH-NMR Center
> > > greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>

> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>
> > > Phone Number:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
> <tel:617-724-2358>>
> > <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
> <tel:617-724-2358>>>
> > > Fax: 617-726-7422 <tel:617-726-7422>
> <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422
> <tel:617-726-7422>
> > <tel:617-726-7422 <tel:617-726-7422>>>
> > >
> > > Bugs:
> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > >
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > >
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > Outgoing:
> > >
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> > >
> > > _______________________________________________
> > > Freesurfer mailing list
> > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu

> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> >
> >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > >
> > >
> > > The information in this e-mail is intended only
> for the
> > person to
> > > whom it is
> > > addressed. If you believe this e-mail was sent to
> you in
> > error and
> > > the e-mail
> > > contains patient information, please contact the
> Partners
> > > Compliance HelpLine at
> > > http://www.partners.org/complianceline . If the e-mail
> was sent to
> > > you in error
> > > but does not contain patient information, please
> contact the
> > > sender and properly
> > > dispose of the e-mail.
> > >
> > >
> > >
> > >
> > > --
> > > *Thomas DeRamus*
> > > UAB Department of Psychology, Behavioral Neuroscience
> > > Graduate Research Trainee
> > > Civitan International Research Center
> > > 1719 6th Ave S, Suite 235J, Birmingham, AL 35233
> > > _Phone_: 205-934-0971 <tel:205-934-0971>
> <tel:205-934-0971 <tel:205-934-0971>> _Email:_
> > tpderamus@gmail.com <mailto:tpderamus@gmail.com>
> <mailto:tpderamus@gmail.com <mailto:tpderamus@gmail.com>>
> > > <mailto:tpderamus@gmail.com
> <mailto:tpderamus@gmail.com> <mailto:tpderamus@gmail.com
> <mailto:tpderamus@gmail.com>>>,
> > faustus@uab.edu <mailto:faustus@uab.edu>
> <mailto:faustus@uab.edu <mailto:faustus@uab.edu>>
> <mailto:faustus@uab.edu <mailto:faustus@uab.edu>
> > <mailto:faustus@uab.edu <mailto:faustus@uab.edu>>>
> > >
> > >
> > > _______________________________________________
> > > Freesurfer mailing list
> > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > >
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> > --
> > Douglas N. Greve, Ph.D.
> > MGH-NMR Center
> > greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > Phone Number: 617-724-2358 <tel:617-724-2358>
> <tel:617-724-2358 <tel:617-724-2358>>
> > Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422
> <tel:617-726-7422>>
> >
> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > Outgoing:
> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> >
> >
> > --
> > *Thomas DeRamus*
> > UAB Department of Psychology, Behavioral Neuroscience
> > Graduate Research Trainee
> > Civitan International Research Center
> > 1719 6th Ave S, Suite 235J, Birmingham, AL 35233
> > _Phone_: 205-934-0971 <tel:205-934-0971> _Email:_
> tpderamus@gmail.com <mailto:tpderamus@gmail.com>
> > <mailto:tpderamus@gmail.com <mailto:tpderamus@gmail.com>>,
> faustus@uab.edu <mailto:faustus@uab.edu>
> <mailto:faustus@uab.edu <mailto:faustus@uab.edu>>
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
> Phone Number: 617-724-2358 <tel:617-724-2358>
> Fax: 617-726-7422
>

> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> Outgoing:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
>
> --
> *Thomas DeRamus*
> UAB Department of Psychology, Behavioral Neuroscience
> Graduate Research Trainee
> Civitan International Research Center
> 1719 6th Ave S, Suite 235J, Birmingham, AL 35233
> _Phone_: 205-934-0971 _Email:_ tpderamus@gmail.com
> <mailto:tpderamus@gmail.com>, faustus@uab.edu <mailto:faustus@uab.edu>
>
>
>
>
> --
> *Thomas DeRamus*
> UAB Department of Psychology, Behavioral Neuroscience
> Graduate Research Trainee
> Civitan International Research Center
> 1719 6th Ave S, Suite 235J, Birmingham, AL 35233
> _Phone_: 205-934-0971 _Email:_ tpderamus@gmail.com
> <mailto:tpderamus@gmail.com>, faustus@uab.edu <mailto:faustus@uab.edu>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--
Thomas DeRamus
UAB Department of Psychology, Behavioral Neuroscience
Graduate Research Trainee
Civitan International Research Center
1719 6th Ave S, Suite 235J, Birmingham, AL 35233
Phone: 205-934-0971 Email: tpderamus@gmail.com, faustus@uab.edu

Thomas DeRamus

UAB Department of Psychology, Behavioral Neuroscience

Graduate Research Trainee

Civitan International Research Center

1719 6th Ave S, Suite 235J, Birmingham, AL 35233

Phone: 205-934-0971 Email: tpderamus@gmail.com, faustus@uab.edu