Dear Experts,
I am trying to "back-normalise" significant clusters identified in a qdec analysis (2 groups, thickness as main variable of interest) back into individual subjects so that I can derive cortical statisitcs.
As per previous posts I have been trying to use mri_cor2label but am running into some problems. My processing is as follows:
1) Identify file of interest which contains 3 clusters (labelled 1.000000 to 3.000000 as viewed in tksurfer and on qdec text output following analysis) significant using Monte Carlo correction 0.05 - mc-z.abs.th13.sig.ocn.annot
2) mri_cor2label --i mc-z.abs.th13.sig.ocn.annot --id 2 --l cluster2
This produces a file called cluster2.label but when I try loading it into tksurfer (tksurfer fsaverage lh inflated - followed by loading of label in menu system) I get the following error message which prevents me from double checking the label:
% ******************** 0 nonzero vertices found
********************
label stat field identically zero - setting
to 1
1890 unassigned vertices in label -
building spatial LUT...
assigning vertex numbers to label...
Couldn't assign 1617 vertices.
1617 unassigned vertices in label -
building spatial LUT...
assigning vertex numbers to label...
Couldn't assign 1617 vertices.
My questions are:
1) Why does this occur ?
2) How can I convert my qdec results (eg. mc-z.abs.th13.sig.ocn.annot to label files which I can then propagate to all subjects using mri_label2label).
Thanks.
Mahinda