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If you are working on a silicon (not Intel) Mac with an M1, M2, M3 processor, then try downloading and installing the development build of freesurfer for the silicon Mac,
https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/freesurfer-macOS-darwin_arm64-dev.pkg
Now you may not get the same numerical results with this newer 2024 build compared to the 7.3.2 release from 2022, but you will get any/all the latest updates/fixes with the 2024 build..

- R.

On Aug 30, 2024, at 19:20, Cacciaguerra, Laura, M.D., Ph.D. <Cacciaguerra.Laura@mayo.edu> wrote:

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Hello everyone,
I am trying to segment MS lesions with "samseg" (FreeSurfer version 7.3.2), but it ends immediately with the following error:

"zsh: illegal hardware instruction  run_samseg --input T1.nii --input T2.nii  --lesion"

Have tried to run the command without the option --lesion and it works, so I guess the error is somehow linked to that option?

Thank you in advance for your help,
All the best,
Laura
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