Hi Freesurfer community,

I was trying to use mris_label2annot to generate annotation file, my commands are:

The output of the command is:

Reading ctab /home/rachelsun/Software/freesurfer/resolution1015_LUT.txt
Number of ctab entries 1016

$Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
cwd /home/rachelsun/Software/freesurfer/subjects/fsaverage5/mri
cmdline mris_label2annot --s p6 --h rh --a t500 --ldir /home/rachelsun/Software/freesurfer/subjects/p6/label/regenerated_rh_500 --nhits nhits.mgh --ctab /home/rachelsun/Software/freesurfer/resolution1015_LUT.txt --l /home/rachelsun/Software/freesurfer/subjects/p6/label/regenerated_rh_500/rh.pericalcarine_7.label --surf pial
sysname  Linux
hostname rachel-pc
machine  x86_64
user     rachelsun

subject p6
hemi    rh
SUBJECTS_DIR /home/rachelsun/Software/freesurfer/subjects
ColorTable /home/rachelsun/Software/freesurfer/resolution1015_LUT.txt
AnnotName  t500
NHitsFile nhits.mgh
nlables 1
LabelThresh 0 0.000000
Loading /home/rachelsun/Software/freesurfer/subjects/p6/surf/rh.pial
 1 107939 rh.lateralorbitofrontal_9
Mapping unhit to unknown
Found 123130 unhit vertices
Writing annot to /home/rachelsun/Software/freesurfer/subjects/p6/label/rh.t500.annot

I am sure I have rh.pericalcarine_7 in the folder, but the code always generates rh.lateralorbitofrontal_9 region. And I also attached my colortable file for your reference.

Thank you for your help.

Best regards,

Rachel