Hi Cherise, the multiple frame error hints to some issue with the data. It means that it has multiple images, like an fMRI volume (which will not work), but it could be multiecho mprage (which would be ok after computing RMS). What are you using as input?
doug

On 4/3/13 10:23 PM, Cherise R. Chin Fatt wrote:

Hello:

I have been trying to use FreeSurfer on an aging population and running into difficulties with Talairach Registration. I am able to run the demonstrate date, but when I run my own data I am getting some very weird results. I have attached screenshots of the different planes for one subject. I have tried this with 5 subjects and getting the same kind of results.

In terms of scripting: I tried to run autorecon1 first and it failed with this error: ERROR: input(s) cannot have multiple frames!

I changed the script and did the following (running one line at a time):

setenv SUBJECTS_DIR test/DTI

recon-all -i DTI/00001.dcm -subjid again

cd $SUBJECTS_DIR/again/mri/orig

mv 001.mgz multiframe.mgz

mri_convert -nth 0 multiframe.mgz 001.mgz

recon-all -motioncor -subjid again

recon-all -talairach -subjid again

recon-all -nuintensitycor -subjid again

recon-all -normalization -subjid again

recon-all -skullstrip -subjid again

% checking registration

tkregister2 --mgz --s again --fstal

If anyone can provide some insight in terms of what I am doing wrong or how to fix the registration would be greatly appreciated.

Thank you,

Cherise.

--

Cherise R. Chin Fatt; MSc
Doctoral Student in Cognition and Neuroscience
School of Behavioral and Brain Sciences
The University of Texas at Dallas
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