Hi Ruopeng, this is the command i ran and resulting error message;

bash-4.1$ /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=aparc.annot:name=pial_aparc:visible=0 \
> /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.inflated:overlay=lh.thickness:overlay_threshold=0.1,3::name=inflated_thickness:visible=0 \
> projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.inflated:visible=0 \
> /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.white:visible=0 \
> projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial \
> --viewport 3d
bash: /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=aparc.annot:name=pial_aparc:visible=0: No such file or directory

Kind regards, Michael

On 14 Jun 2017, at 15:05, Ruopeng Wang <rpwang@nmr.mgh.harvard.edu> wrote:

Please copy and paste the full command line you ran and the error message you got.

Thanks,

Ruopeng

On Jun 14, 2017, at 9:26 AM, Michael Davies <Michael.davies30@hotmail.com> wrote:

Hello i am trying to access the data files in 3D but i am having problems opening the files using the command syntax given on the website.

I have set my own pathway using my own data;

“/projects/pbic1030/Micahel/subjects/Subj1/fsaverage/surf/”

However, one i progress with the code past this point i am unable to load the data and get the error message No file or directory in the terminal even though this is the correct pathway to the data.

When i enter the rest as follows this is when the problems begin to occur lh.pial:annot=aparc.annot:name=pial_aparc:visible=0 \

Could you please advise me how to proceed?

Kind regards, Michael

University of Birmingham

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.