External Email - Use Caution        

Hi，

I am sorry. In my recon_all folder, there isn't lh.white, rh.white,lh.pial and rh.pial files, so I can run below command 

freeview -v topo_defect_before/mri/brainmask.mgz \

topo_defect_before/mri/wm.mgz:colormap=heat:opacity=0.4:visible=0 \
-f topo_defect_before/surf/lh.white:edgecolor=yellow \
topo_defect_before/surf/lh.pial:edgecolor=red \
topo_defect_before/surf/rh.white:edgecolor=yellow \
topo_defect_before/surf/rh.pial:edgecolor=red \
topo_defect_before/surf/lh.orig.nofix:visible=0

Hope you can give me more advises. Thank you very much.

Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu> 于2019年4月11日周四 下午11:23写道：

check out
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview


On 4/11/19 10:58 AM, Abby tang wrote:
>
>         External Email - Use Caution
>
> Hello FreeSurfer Developers, I'm attempting to recon-all subjects but
> for some of my subjects I get the following error when I run recon-all
> command: CORRECTING DEFECT 0 (vertices=18460, convex hull=3400, v0=4)
> XL defect detected... Killed Linux abby-virtual-machine
> 4.15.0-47-generic #50-Ubuntu SMP Wed Mar 13 10:44:52 UTC 2019 x86_64
> x86_64 x86_64 GNU/Linux
> I don't know how to check and amend ?h.orig.nofix. please give me some commands in detail.
> Thank you for your help.
>
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> Freesurfer@nmr.mgh.harvard.edu
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