Hi all,

Is -T2 used only in -autorecon3 as shown here:

recon-all -subject subjectname -T2 /path/to/T2_volume -T2pial -autorecon3

In other words, if I do:

recon-all -subject subjectname -i /path/to/input_volume -T2 /path/to/T2_volume -T2pial -all

Will only -autorecon3 make use of the provided -T2 and not -autorecon1 or -autorecon2?

I think the answers are yes because -T2 appears under -autorecon3 only in ReconAllDevTable.

Best,
Tashrif