The brain.mgz doesn’t exist in that location. How did you create it? Maybe it in a subject’s dir?

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Rachel Wagner
Sent: Tuesday, June 28, 2022 2:26 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Error Opening File

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Hello,

I am getting the following error when trying to convert a file on my desktop:

developer@developer-VirtualBox:~$ mri_convert home/developer/desktop/brain.mgz brain.nii

mri_convert home/developer/desktop/brain.mgz brain.nii

reading from home/developer/desktop/brain.mgz...

error: mghRead(home/developer/desktop/brain.mgz, -1): could not open file

developer@developer-VirtualBox:~$

Am I doing something incorrectly?

Thanks!

Rachel