External Email - Use Caution        

Hi Isabelle,

 

It’s been a couple of years since I ran FreeSurfer on a Mac, but I also have had this issue before and it was due to the macOS. I don’t know if anything has changed recently but if not then the only solution would be to try to install an older macOS that will support 32bit apps.

 

Best,

Nathan

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Isabelle Deschamps <Isabelle.Deschamps@georgiancollege.ca>
Date: Wednesday, 16 March 2022 at 19:20
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] FW: Tkregister2 not opening GUI

⚠ External sender. Take care when opening links or attachments. Do not provide your login details.

        External Email - Use Caution        

Good afternoon,

 

I am following up on my question regarding the GUI for TKregister2 and TKregister2_Cmld not opening.

 

Is there another way to open the GUI?

 

Thank you kindly for your help,

 

isabelle

 

From: Isabelle Deschamps <Isabelle.Deschamps@GeorgianCollege.ca>
Date: Thursday, March 10, 2022 at 14:52
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Tkregister2 not opening GUI

Good afternoon,

 

I am trying to verify the registration and for some reason the GUI is not opening.

 

I am using a Macbook Pro running macOS Montery with a 2.4 Gz Quad-Core Intel Core i5

 

I have Freesurfer version: maOS-7.2.0

 

I do not get an error when I run TKregister2 or TKregister_cmld

 

This is the output that I get without the GUI opening

 

No target volume specified, assuming FreeSurfer orig volume.

target  volume orig

movable volume (null)

reg file       (null)

LoadVol        0

ZeroCRAS       1

7.2.0

Diagnostic Level -1

 

% % % % % % % % avi2talxfm

 

talairach.xfm ---------------------

 1.00857   0.02020  -0.00990  -0.12365;

-0.01789   1.03251   0.24795  -28.10577;

 0.02556  -0.30660   1.20913   3.54973;

 0.00000   0.00000   0.00000   1.00000;

INFO: loading target /Volumes/RestingState/fMRI/fMRI/Freesurfer/S0010_FS/mri/orig.mgz

Zeroing CRAS of target

new xfm -----------------

 1.00857   0.02020  -0.00990   1.93629;

-0.01789   1.03251   0.24795  -11.46406;

 0.02556  -0.30660   1.20913  -50.28331;

 0.00000   0.00000   0.00000   1.00000;

---------------------

Ttarg: --------------------

-1.00000   0.00000   0.00000   128.00000;

-0.00000   0.00000   1.00000  -128.00000;

 0.00000  -1.00000   0.00000   128.00000;

 0.00000   0.00000   0.00000   1.00000;

INFO: loading movable /Applications/freesurfer/7.2.0/average/mni305.cor.mgz

Tmov: --------------------

-1.00000   0.00000   0.00000   128.00000;

 0.00000   0.00000   1.00000  -128.00000;

 0.00000  -1.00000   0.00000   128.00000;

 0.00000   0.00000   0.00000   1.00000;

mkheaderreg = 0, float2int = 0

---- Input registration matrix --------

 1.00857   0.02020  -0.00990   1.93629;

-0.01789   1.03251   0.24795  -11.46406;

 0.02556  -0.30660   1.20913  -50.28331;

 0.00000   0.00000   0.00000   1.00000;

Determinant 1.33659

subject = S0010_FS

RegMat ---------------------------

 1.00857   0.02020  -0.00990   1.93629;

-0.01789   1.03251   0.24795  -11.46406;

 0.02556  -0.30660   1.20913  -50.28331;

 0.00000   0.00000   0.00000   1.00000;

UnZeroing CRAS for fstal output xfm

 

Any help would be greatly appreciated.

 

Isabelle

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer