I'm running:

recon-all -s Diff02 -hippo-subfields

with the following error.

Thanks.


Stefano

Subject Stamp: freesurfer-Darwin-lion-stable-pub-v5.2.0
Current Stamp: freesurfer-Darwin-lion-stable-pub-v5.2.0
INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_prova/Diff02
Actual FREESURFER_HOME /Applications/freesurfer
-rw-rw-r--  1 Stefano  wheel  499999 Mar 22 16:53 /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/scripts/recon-all.log
Darwin iMac-di-Stefano.local 12.3.0 Darwin Kernel Version 12.3.0: Sun Jan  6 22:37:10 PST 2013; root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64
#--------------------------------------------
#@# Hippocampal Subfields processing Fri Mar 22 16:56:31 CET 2013
\n mkdir -p /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults
\n kvlSegmentHippocampalSubfields.sh Diff02 left /Applications/freesurfer/subjects/subject_prova/Diff02 /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults \n
Doing left side
meshFileName: /Applications/freesurfer/data/GEMS/CurrentMeshCollection30.gz
compressionLookupTableFileName: /Applications/freesurfer/data/GEMS/compressionLookupTable_left.txt
boundingBoxFileName: /Applications/freesurfer/data/GEMS/imageDump.mgz
subjectName: Diff02
side: left
inputDirectory: /Applications/freesurfer/subjects/subject_prova/Diff02
outputDirectory: /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults
directory /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02 already exists
directory /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02/left already exists
cd /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02/left
cp -f /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/nu.mgz .
cp -f /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/aseg.mgz .
cp -f /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/transforms/talairach.xfm .
cp /Applications/freesurfer/data/GEMS/imageDump.mgz .
kvlApplyTransform imageDump.mgz -0.9991 -0.0328 0.0258 144.0010 -0.0330 0.9994 -0.0086 2.6560 0.0255 0.0094 0.9996 -3.1939
dyld: Library not loaded: libITKCommon.3.16.dylib
  Referenced from: /Applications/freesurfer/bin/kvlApplyTransform
  Reason: image not found
/Applications/freesurfer/bin/kvlSegmentHippocampalSubfields.sh: line 18: 77530 Trace/BPT trap: 5       kvlApplyTransform imageDump.mgz -0.9991 -0.0328 0.0258 144.0010 -0.0330 0.9994 -0.0086 2.6560 0.0255 0.0094 0.9996 -3.1939
failed to do kvlApplyTransform imageDump.mgz                               -0.9991   -0.0328    0.0258  144.0010                               -0.0330    0.9994   -0.0086    2.6560                                0.0255    0.0094    0.9996   -3.1939
Darwin iMac-di-Stefano.local 12.3.0 Darwin Kernel Version 12.3.0: Sun Jan  6 22:37:10 PST 2013; root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64

recon-all -s Diff02 exited with ERRORS at Fri Mar 22 16:56:31 CET 2013

For more details, see the log file /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting