Daer Claire

The bus error might be related to Xquartz. Installing Xquartz again solved the issue on most Intel-based Macs.

Cheers
Jürgen

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Von: Claire Morley <clairemorley2014@u.northwestern.edu>
Antworten an: Freesurfer Mailinglist <freesurfer@nmr.mgh.harvard.edu>
Datum: Montag, 20. Oktober 2014 09:56
An: Freesurfer Mailinglist <freesurfer@nmr.mgh.harvard.edu>
Betreff: [Freesurfer] Bus error when trying to launch tksurfer

Good Morning,
I have now been able to get the testing command: tksurfer bert rh pial to run, but it stops midway and issues a bus error. Please see the following script:

DBM-Users-MacBook-Pro-4:~ dbmuser$ tksurfer bert rh pial
subject is bert
hemi    is rh
surface is pial
surfer: current subjects dir: /Applications/freesurfer/subjects
surfer: not in "scripts" dir ==> using cwd for session root
surfer: session root data dir ($session) set to:
surfer:     /Users/dbmuser
checking for nofix files in 'pial'
Reading image info (/Applications/freesurfer/subjects/bert)
Reading /Applications/freesurfer/subjects/bert/mri/orig.mgz
surfer: Reading header info from /Applications/freesurfer/subjects/bert/mri/orig.mgz
surfer: vertices=133299, faces=266594
surfer: single buffered window
surfer: tkoInitWindow(bert)
Bus error

Any idea what might be going wrong? I really need to use tksurfer to look at cortical thickness in gyrification in ROIs. (Oh and before I did this, I did set the environment as normal).

Thanks so much for your help!
Claire

--

We shall not cease from exploration. And the end of all our exploring will be to arrive where we started and know the place for the first time- T.S. Eliot


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