Dear Chris,

This is a pretty weird one!

Question: what files are there in the temporary directory subjectDir/subjectBase/tmp/hippoSF_T1_long.v22_left/ ?

Cheers,

Juan Eugenio Iglesias

http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Hemond, Christopher <Christopher.Hemond@umassmemorial.org>
Date: Wednesday, April 19, 2023 at 18:47
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Hippocampal/amygdala subfields hemisphere error

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Dear experts,

I'm getting an error running the longitudinal hippocampal/amygdala subfields analysis and hoping for help. I've been able to complete this analysis without problems for all but one of my subjects. The issue is that only the left hemisphere will be processed (but successfully). Cross-sectional hippocampal/amygdala subfield processing works fine, and the quality of the scans and recon-all output looks good. I've tried several times to re-process the data but to no avail. I get the following error message:

...

Wrote image to file image_tp_2.mgz

This file does not contain MRI parameters

Unable to perform assignment because the left and right sides have a different number of elements.

Error in SegmentSubfieldsT1Longitudinal (line 2136)

MATLAB:matrix:singleSubscriptNumelMismatch

Any ideas on what I might be doing wrong? I couldn't find this specific error in the forums.

Thanks very much,

Chris

(running freesurfer-darwin-macOS-7.3.2-20220804-6354275)

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