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Hello, 

Thank you for the quick response. 
Yes, I have kind of done that. 

But just wanted a little more clarification if I should use GLM further. 

Thanks for the info.



On Thu, Jun 24, 2021 at 7:41 PM Iglesias Gonzalez, Juan E. <JIGLESIASGONZALEZ@mgh.harvard.edu> wrote:
Dear Ishi,

At this point, you have a bunch of volumes for each subjects (in hippo test.txt), not maps. You can analyze them with your favorite statistical software ;-)

Cheers,

/E 

Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
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On Jun 24, 2021, at 09:36, Ishi Tandon <ishi.tandon@student.amity.edu> wrote:

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Hello FS experts, 

I have performed hippocampus subfield segmentation on my T1 scans. 

I also gathered the volume from all my analyzed subjects through the following command -

quantifyHippocampalSubfields.sh  T1 hippotest.txt

Now I want to perform statistics on these maps to find out the differences between groups. 
I am not sure if I should use mris_preproc and then follow the general GLM approach. 

Could you please give me some clarification on this?

Thanks in advance.

Regards,
Ishi Tandon (she/her)
B.Tech + M.Tech - Cognitive Neuroscience
Amity University, Rajasthan
Contact- +918239259846

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